Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29n01
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794... 37 0.017
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 35 0.069
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381 31 0.85
08_02_0077 - 11979497-11979654,11980012-11982178 31 1.1
10_08_0331 - 16831646-16834756 29 2.6
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 29 2.6
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 29 4.5
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 28 6.0
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650... 28 6.0
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 7.9
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 28 7.9
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 28 7.9
05_05_0299 - 23930657-23932627 28 7.9
02_04_0153 - 20330775-20330831,20330913-20330999,20333119-203331... 28 7.9
01_07_0206 + 41990251-41992032,41992131-41992361 28 7.9
>04_01_0605 +
7944514-7944637,7944930-7945198,7945467-7945559,
7945824-7945958,7946448-7946538,7947837-7947929,
7948418-7948578,7948589-7948675
Length = 350
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 400 FQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTD 555
++EF+ LK I+EF +HP+ +E EE+ Q ++ VP+ FTD
Sbjct: 45 WEEFFG-LKSIQEFGNEHPHRPGTTGYIEKEEIWAQEDDATAAANVPIPFTD 95
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 34.7 bits (76), Expect = 0.069
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 184 RSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS-----IRLKELYED 348
R+ HE+ ER V+E+ + R+ + HR++++ D I S +R KE E
Sbjct: 10 RAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLIIVRTKENAEK 69
Query: 349 KDGLRKEEISALSGPHEFQ 405
K L EE+ A E Q
Sbjct: 70 KLTLTYEEMEAEREEEEVQ 88
>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
Length = 406
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 265 TINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFH 444
T+ D K LH ++ S +L EL + DGLRKE +L E+++ + +KQ+++
Sbjct: 141 TVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QSLRSAFEYEK-NTNIKQVEQMR 197
Query: 445 RKHPN 459
N
Sbjct: 198 TMEMN 202
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 244 KKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 393
KK H H +N H+RY E S+ +KE +D + E+I P
Sbjct: 286 KKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFGEDIRCAQMP 335
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 261 PMPSFFVKNFFDHCVHGSFPFLMVASLLLKYASTQLNQLY 142
PMP+ + +D+ ++GSFP ++ S + Y N L+
Sbjct: 193 PMPTVTFMSLYDNSINGSFPDFILKSGNITYLDLSQNTLF 232
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 568 GKYLDLHSCYEKYINLKGIEKVDYITYLSIFDHLF 672
GK LDLH +++ + GI+K Y++ L F+ L+
Sbjct: 103 GKDLDLHQLFKEVTSRGGIDKKYYMSLLYHFERLY 137
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 371 KYQHCQVHMSSRSSIRDLSKLKSFIENIQMKYLYPCL*N-LKSWQIKGKILLRITQFLSS 547
+Y ++ ++ +++LSK SF E+ + YL CL L I G+I+ IT L
Sbjct: 553 RYVAADINPYAQPIVQNLSKALSFPESYENPYLMKCLMRVLGIANIAGQIVHEITARLVG 612
Query: 548 SLMK 559
LM+
Sbjct: 613 ILME 616
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 196 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE-LYEDKDGLRKEE 372
E++ + D ++ + H +T HR KNLH + E I+L E L GL + E
Sbjct: 708 EQKRQEADNAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTENLDRSTKGLEELE 767
Query: 373 ISALSGPHEFQEFYSRL 423
+ L + +E S +
Sbjct: 768 NAKLDLENTSRELKSTI 784
>01_03_0214 +
13863123-13863593,13863671-13864132,13864308-13865038,
13865121-13865291,13865371-13865629,13866069-13866158
Length = 727
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 367 EEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVE 546
EE +L EF++ S + ++ + +HP+ + ++ E + Q + A VP
Sbjct: 60 EEFCSLKNTQEFRKS-SEVHRLLQQRNEHPHRLGTAGYIDKEAIWAQEDAAAAAVNVPAP 118
Query: 547 FTD 555
F+D
Sbjct: 119 FSD 121
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 196 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE 336
E++ + D+ ++ + H +T HR KNLH + E I+L E
Sbjct: 488 EQKRQEADSAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTE 534
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 555 ISELDRNCVILSRIFPLICQLFKFYRHGYRYFIWMFSMK 439
++ L N V+ IF +C++F R R F W F+++
Sbjct: 86 MAHLTPNAVMTLAIFAHLCEMFIGVRPSLRLFRWFFTVQ 124
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 555 ISELDRNCVILSRIFPLICQLFKFYRHGYRYFIWMFSMK 439
++ L N V+ IF +C++F R R F W F+++
Sbjct: 86 MAHLTPNAVMTLAIFAHLCEMFIGVRPSLRLFRWFFTVQ 124
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 298 HDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 438
H R++E S+R KE + KEE A + + +E LK +K+
Sbjct: 322 HSRFVEGSVRKKESSRKQQRKNKEERIARAKQEQAEEL-KHLKNLKK 367
>02_04_0153 -
20330775-20330831,20330913-20330999,20333119-20333157,
20333596-20333754,20334035-20334104,20334187-20335035,
20335270-20335562,20335640-20336347
Length = 753
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 367 EEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVE 546
EE +L EF+E S ++ + +HP+ + + E + Q + A VPV
Sbjct: 139 EEFFSLKNTQEFRES-SEAHRLLQQRNEHPHRLGTTGYIGKEAIWVQEDAAAAAANVPVP 197
Query: 547 FTD 555
F+D
Sbjct: 198 FSD 200
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 27.9 bits (59), Expect = 7.9
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Frame = +1
Query: 247 KTGHRETI-NADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRL 423
KT HR D K + D E S R L+E + G R ++++ L GP ++ L
Sbjct: 208 KTAHRMGFYQFDGEGKPMEDFDSERSRRAC-LWERQIGGRGDDVNELYGPSSCKD----L 262
Query: 424 KQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEK 603
+ F+R++ N +S + E Q + +E E S K
Sbjct: 263 LTLYNFNRQYVNMDKTWLSKQAEMSTLQLGQWKPSWRHRIEIVSPETLEAATMCESL--K 320
Query: 604 YINLKGIEKVDYI 642
Y++L+GI ++YI
Sbjct: 321 YLSLRGISLIEYI 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,499
Number of Sequences: 37544
Number of extensions: 276993
Number of successful extensions: 855
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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