Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29n01
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 457 NEISVPMSVEFEELANQRENPAEDYTVPVE 546
           N IS+ + +E+E + N + N     T+P+E
Sbjct: 70  NHISLTLDLEYELVENLQANEKPWSTLPIE 99


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 457 NEISVPMSVEFEELANQRENPAEDYTVPVE 546
           N IS+ + +E+E + N + N     T+P+E
Sbjct: 108 NHISLTLDLEYELVENLQANEKPWSTLPIE 137


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 198 GKGKNHGRNGQRNSSQKNWASGDYK 272
           G+G N GR G  N ++    + DY+
Sbjct: 93  GRGGNRGRTGFNNKNKDGDDNNDYE 117



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 198 GKGKNHGRNGQRNSSQKNWASG 263
           GKG+ HG+ G R        +G
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTG 102


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 517 PAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIEKV 633
           P+ DY + V      G+G+Y  +   Y+K  +  G++ V
Sbjct: 487 PSTDYAIQVRAKTTRGWGEYTPV--VYKKTPHAMGLDYV 523


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 409 FYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFT 552
           FYSRL      H K   E +  M+V+       +E  AE     V FT
Sbjct: 239 FYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFT 286


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 607 CTFHNTNVGPNTFHSLLHQ*TRQELCN 527
           C   NT + PNTF  +    T    CN
Sbjct: 323 CWDTNTELNPNTFILVAENNTTMVFCN 349


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 409 FYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFT 552
           FYSRL      H K   E +  M+V+       +E  AE     V FT
Sbjct: 239 FYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFT 286


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 350 KMDYEKKKYQHCQVHMSSRSSIRDLSKLKSFIENIQMKYLY 472
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 350 KMDYEKKKYQHCQVHMSSRSSIRDLSKLKSFIENIQMKYLY 472
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 371 KYQHCQVHMSSR 406
           + QHC++HM  R
Sbjct: 385 RMQHCELHMQPR 396


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 371 KYQHCQVHMSSR 406
           + QHC++HM  R
Sbjct: 385 RMQHCELHMQPR 396


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +2

Query: 275 LIIV*RIYMIDILKPL*DLKNCMKIKMDYEKKKYQHCQVHMSSRSSIRDLSKLK 436
           LI++  IY  + +  + D +NC  ++ +    K ++ ++    R+   D+S  K
Sbjct: 15  LILIIFIYSNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTK 68


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +2

Query: 275 LIIV*RIYMIDILKPL*DLKNCMKIKMDYEKKKYQHCQVHMSSRSSIRDLSKLK 436
           LI++  IY  + +  + D +NC  ++ +    K ++ ++    R+   D+S  K
Sbjct: 15  LILIIFIYSNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTK 68


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 577 LDLHSCYEKYINLKG-IEKVDYITY 648
           L LH C+ +  N+KG +  VD + +
Sbjct: 556 LSLHKCFMRVENVKGAVWTVDEVEF 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,664
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)