Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m15
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0330 - 16816497-16819952 30 1.5
05_03_0478 - 14526180-14526578 30 2.0
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 29 3.4
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 28 6.0
11_06_0463 + 23879587-23879771,23879783-23881658 28 6.0
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 28 6.0
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 6.0
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612... 28 7.9
09_01_0019 + 403078-404211 28 7.9
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 28 7.9
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 28 7.9
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848 28 7.9
>10_08_0330 - 16816497-16819952
Length = 1151
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 185 GQDHSFKI*KCQISLPLFTSRKNINVNSLSQCCYDEISNANGVALFQL 42
G++ F+I I + L T +++ NSLSQC DE+ N G+ L
Sbjct: 938 GKEQIFEIKTYAIDIQLVTGI-SLSGNSLSQCIPDELMNLQGLQFLNL 984
>05_03_0478 - 14526180-14526578
Length = 132
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 561 RKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKR 662
R+QR D ++ DGY RRR E +R R +R
Sbjct: 57 RRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRR 90
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 485 RGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGPCAQQ--LLLAQDELGNHVSADCDWS 312
R +V +E+RR ET WR L W P G G A LL A E G +
Sbjct: 679 RAVVRKEVRRHRETRRGRWRRLLLWW--PLGAHGALAGAGVLLDAAVEGGRETARQARAH 736
Query: 311 ARILTVV 291
AR+L V+
Sbjct: 737 ARLLVVL 743
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 489 SNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKDD 602
S G +G S G F D FG RK E + D KDD
Sbjct: 211 SFGDAGGSTGGGDFSGAGGDSFGSRKNDELMDDLFKDD 248
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 353 PEPATAAERRGRCSPRARPS 412
PEP TAAE+ G SP PS
Sbjct: 305 PEPPTAAEKSGDASPSLSPS 324
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 488 RRGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 381
+ G V +DG R R G+ GGP G TGP
Sbjct: 123 KAGCVGSRADQDGRLDGREVRDGGISSGGPRGNTGP 158
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 498 SSGDSHDYGA-FDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRS 650
++GD+H G FD + ++F + ++++ D KD+ + RR E AKR+
Sbjct: 251 TNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLRREAERAKRA 302
>12_02_0333 +
17660454-17660502,17660587-17660704,17661181-17661255,
17661341-17661412,17661606-17661643,17661758-17661791,
17662396-17662519,17663334-17663417,17663991-17664056,
17664110-17664316
Length = 288
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 482 GLVHREMRRDGETSARWWRSAGLHWGGP*GC 390
GL H +R S +W G +W P GC
Sbjct: 152 GLEHALGKRTTADSGEFWHVEGFYWRNPVGC 182
>09_01_0019 + 403078-404211
Length = 377
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 489 SNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKDDGYWDRRRRNNEAAKRSREKR 662
S+G SG A D KR R++R +S DG R+ + AKRS+EKR
Sbjct: 323 SDGDSGSGASDSADDRKRSS----RRRRHRKSESSGSDG----DERHGQGAKRSKEKR 372
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 482 GLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 381
G V +DG R R G+ GGP G TGP
Sbjct: 220 GCVGSRADQDGRIGGREVRDGGISSGGPKGNTGP 253
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 326 PPKHGCRVHPEPATAAERRGRCSPRARPSAD 418
PP G V P PAT A + G C P A D
Sbjct: 63 PPPVGLPVPPLPATMAPQPGYCVPAAATVVD 93
>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 546 DFFGQRKQREFIPDSKK-DDGYWDRRRRNNEAAKRSREKR 662
D + ++ ++PDS+ G+W +RRNNE+++R+ R
Sbjct: 257 DSWDNHRENCYVPDSQGWSYGHW--KRRNNESSRRNSRGR 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,654
Number of Sequences: 37544
Number of extensions: 304995
Number of successful extensions: 1073
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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