Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m11
         (663 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZS24 Cluster: CDNA FLJ45884 fis, clone OCBBF3021166; ...    34   2.7  
UniRef50_P38671 Cluster: DNA-directed RNA polymerase, mitochondr...    33   8.1  

>UniRef50_Q6ZS24 Cluster: CDNA FLJ45884 fis, clone OCBBF3021166;
           n=1; Homo sapiens|Rep: CDNA FLJ45884 fis, clone
           OCBBF3021166 - Homo sapiens (Human)
          Length = 211

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 663 PVPFFFXLEVTLGGVPEEDPGKDRLESGTDFIVCALRRSAADVPGNS 523
           P P       T G VP +D G+DR+  G D +     +  A+ PGNS
Sbjct: 118 PEPRSGQCRFTAGPVPGQDQGRDRVAQGQDRVRMGPEQDRAESPGNS 164


>UniRef50_P38671 Cluster: DNA-directed RNA polymerase, mitochondrial
           precursor; n=1; Neurospora crassa|Rep: DNA-directed RNA
           polymerase, mitochondrial precursor - Neurospora crassa
          Length = 1423

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 464 DVSYEDNLDKPYKIKLKDGRELP--GTSAADLLKAQTMKSVPDS 589
           DV   D++ K ++  + DGRELP  G + A LLKA    + P++
Sbjct: 180 DVDKADDIHKAFETMVSDGRELPVGGETVALLLKASLTSTDPET 223


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,574,103
Number of Sequences: 1657284
Number of extensions: 9289480
Number of successful extensions: 22749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22748
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)