Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m11
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   2.4  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.2  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   7.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   7.4  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 358 ILCSALFSLSSYHFVCMLPHYQTLVIG 278
           IL SAL+  SSYHFV  L   + L+ G
Sbjct: 308 ILQSALYLTSSYHFVLFLIFVEGLIGG 334


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +3

Query: 264 NNLRAPITSVW*CGNIHTKWYEDNENKALQRMKSSLIHHLLKNLRSTGXKSTREESYKMS 443
           NN+   +T++      + +WY++     L++MK+ ++      ++S    STR + Y ++
Sbjct: 601 NNIELVLTAIAKLTLYNYRWYQEYSPFLLEQMKNRIMQDGALKMKSI-LASTRLDPYILN 659

Query: 444 LI 449
           LI
Sbjct: 660 LI 661


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 372 SMTISSSVVLCSRCLRTILYVCYHITK 292
           S T+ SS V C+ CL+ I    +H TK
Sbjct: 52  SPTLRSSSVACNTCLKIIRNDSFHCTK 78


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 434 QDEFDSDTSIDVSYEDNLDKPYKIKLKDGRELPGTSAADLLKAQTMKSVPDSRR 595
           +DE  S TS+  S +DNLD     +L+ G E    SAA     + +KSV   +R
Sbjct: 245 EDESVSTTSVHDSEDDNLDS-NNFQLEIGTE--AKSAAPDEPQEIIKSVSGGKR 295


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
 Frame = +2

Query: 320 MVRRQREQ--STTEDEIVIDTP 379
           M+RR+RE+  +  E+E+VIDTP
Sbjct: 1   MLRRKRERRNAVKENEMVIDTP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,050
Number of Sequences: 5004
Number of extensions: 42607
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)