Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m11
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0803 + 6030742-6031038,6031228-6031314,6031620-6031821,603...    29   2.5  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    28   5.8  
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388...    28   7.6  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    28   7.6  

>06_01_0803 +
           6030742-6031038,6031228-6031314,6031620-6031821,
           6031926-6032047,6032226-6032447
          Length = 309

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 58  FIDYYLHKYNKYQSPFT 108
           FIDYYLHK+N   +P T
Sbjct: 164 FIDYYLHKFNDDDTPST 180


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 378 GVSMTISSSVVLCSRCLRTILYVCY 304
           G S T+S+S++ C+RC  T+   CY
Sbjct: 292 GESSTVSNSMLNCNRCKVTVHQKCY 316


>12_01_0490 +
           3878436-3878466,3878559-3879113,3879218-3879777,
           3880660-3880965,3881071-3881202,3881623-3881756,
           3881939-3882015,3882084-3882226,3883376-3883633,
           3884085-3884111
          Length = 740

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 318 KWYEDNENKALQRMKSSLIHHLLKNL 395
           K + D E + +QR+ +++I+H LK L
Sbjct: 625 KLFADQEEREIQRLSATIINHQLKRL 650


>11_04_0442 -
           17790811-17790889,17791047-17791114,17791144-17791166,
           17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 561 ALRRSAADVPGNSLPS-FNFIL*GLS 487
           AL +S ADVP  SLPS FNF+  G S
Sbjct: 386 ALVKSGADVPAMSLPSMFNFLPVGSS 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,117
Number of Sequences: 37544
Number of extensions: 225612
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)