Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m11
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppress...    27   9.0  
U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.        27   9.0  
S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.        27   9.0  

>AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical
           protein F29A7.3 protein.
          Length = 150

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 573 FIVCALRRSAADVPGNS-LPSFNF 505
           F +CAL  SAA+ PG+S  PSF F
Sbjct: 7   FALCALASSAAEAPGSSHSPSFKF 30


>Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical
           protein F47B8.7 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/74 (20%), Positives = 34/74 (45%)
 Frame = -1

Query: 231 IALNIFIYFIFKFSNSTGEKTFRDMV*ITKKLLAIQNSLWLCKRTLIFIIFM*VIINEIK 52
           I LN+ +  +F    ST  K F+ ++ +TK +  + ++ ++    +   I +      + 
Sbjct: 41  IMLNVLVILVFTTRISTASKLFKKVMTVTKLVEMLFSASYILTAPVFTSISVDDSFTGLM 100

Query: 51  FFSSNCSVNMYFSQ 10
             ++    N Y+SQ
Sbjct: 101 IVNTGWQFNFYYSQ 114


>U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppressor
           of activatedras protein 1 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 517 WERVAWNIS-CRSP--QSTNNEICTRFKAI 597
           WER AWN+S  R P  Q++ NE+  +F+ I
Sbjct: 445 WERHAWNMSTIRGPNAQASWNEVTIQFETI 474


>U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 517 WERVAWNIS-CRSP--QSTNNEICTRFKAI 597
           WER AWN+S  R P  Q++ NE+  +F+ I
Sbjct: 445 WERHAWNMSTIRGPNAQASWNEVTIQFETI 474


>S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 517 WERVAWNIS-CRSP--QSTNNEICTRFKAI 597
           WER AWN+S  R P  Q++ NE+  +F+ I
Sbjct: 445 WERHAWNMSTIRGPNAQASWNEVTIQFETI 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,103
Number of Sequences: 27780
Number of extensions: 232881
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)