Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m06
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical pr... 205 3e-53
Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical p... 149 3e-36
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p... 31 1.1
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 30 1.9
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 2.6
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.9
>L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical
protein F54H12.6 protein.
Length = 213
Score = 205 bits (500), Expect = 3e-53
Identities = 114/224 (50%), Positives = 141/224 (62%), Gaps = 4/224 (1%)
Frame = +2
Query: 68 VGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 244
V DVK+ GL N LAE+++ +G+ S D Q+F +G AP A+ P+V RWY +AS
Sbjct: 2 VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61
Query: 245 YTPAERKTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 418
YT AERKTW+ G++P DLFGS
Sbjct: 62 YTDAERKTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEER 109
Query: 419 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 598
L AYA+KK+KK IAKSS++LDVKPWDDETD+ EME VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169
Query: 599 GINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIAAFXKI 727
GI KLQI+ VIED KVSVD L EKI +FED VQSVDI AF KI
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213
>Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical
protein Y41E3.10a protein.
Length = 263
Score = 149 bits (360), Expect = 3e-36
Identities = 77/125 (61%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Frame = +2
Query: 356 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 535
DLFGS L AYA KK+ K IAKSS++LDVKPWDDETD+ EME
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198
Query: 536 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIA 712
VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI +FED VQSVDI
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIV 258
Query: 713 AFXKI 727
AF KI
Sbjct: 259 AFNKI 263
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 257 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 120
QP CM + + VV+ PAP Q + Q +++C+QT+ Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171
>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
M01F1.7 protein.
Length = 1034
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 74 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 253
D + G D+ +Y E+ Y+ Y ++ D+Q N PH L ++N S P
Sbjct: 866 DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925
Query: 254 AERKT 268
++K+
Sbjct: 926 LKQKS 930
>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
protein M01F1.7 protein.
Length = 1034
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 74 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 253
D + G D+ +Y E+ Y+ Y ++ D+Q N PH L ++N S P
Sbjct: 866 DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925
Query: 254 AERKT 268
++K+
Sbjct: 926 LKQKS 930
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 473 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 652
SI+L VKP DDE ++++ NQ M G LW A++ Y ++ I V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489
Query: 653 DLLTEK 670
+T K
Sbjct: 490 HFITPK 495
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 548 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFVQ 697
E E L G+ LVPV N+LQI+C DD V + T + E D ++
Sbjct: 14 EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIR 67
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 257 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 120
QP CM + + VV+ PA Q + Q +++C+QT+ Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,299
Number of Sequences: 27780
Number of extensions: 311238
Number of successful extensions: 941
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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