Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m04
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 38 0.001
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 31 0.15
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 30 0.35
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.35
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 0.82
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.82
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 28 1.1
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 28 1.1
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 28 1.4
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 1.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 1.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.9
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 2.5
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 2.5
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 3.3
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 3.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.3
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 4.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 4.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 4.4
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 4.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 5.8
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 5.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 5.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.6
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.6
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 7.6
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 7.6
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.6
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.6
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 7.6
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/79 (20%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +3
Query: 171 KAEYKELGRPKKPMSSYFIYMQSRKDNI------QGKTLKEYQETVKKDWINLPDSEKAK 332
K + ++ +PK+P S+Y ++ ++++ I + +KE + + + W +L + ++
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKT 167
Query: 333 LEKQAQTLMDKYKKDLQAW 389
E++A L + Y++++ A+
Sbjct: 168 YEEEASKLREAYEEEMAAY 186
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 441 AKEKKTKKVDSSQ*ELGCSDDADSILTDSPIVDMKSVQSIDKDVKTSQIIPLNSDSIGKD 620
AK K+ K+ S+ + SD+AD +TD I+ + + QS++++ K+ ++ L++ K
Sbjct: 371 AKLKEIKENSFSENQQ--SDEADYNVTDDLILQLATQQSLEENKKSKELFSLSASEFDKL 428
Query: 621 QRETDT 638
E T
Sbjct: 429 NSEKKT 434
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 29.9 bits (64), Expect = 0.35
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = +3
Query: 3 QLDMETKTQMAKEYQKDLEDY---NKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLK 173
++D+E + K+Y+K D N +A E + + + +KR K+E +A + K
Sbjct: 122 KIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQK 181
Query: 174 AEYKELGRPKKPMSSYFIYMQSRKDN---IQ-GKTLKEYQETVKKDWINLPDSEKAKLEK 341
+ + R + F S KD IQ +LK+ QE + N+ S L
Sbjct: 182 EKER---REQVEQQIIFDLATSGKDPNKIIQLSDSLKKQQENIASSVSNISRSSSILLSD 238
Query: 342 QAQTLMD 362
Q D
Sbjct: 239 VQQVAED 245
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.35
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +3
Query: 99 TEEQKADIKRVKEEM-AQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKE 275
T++Q D+K+ KEEM + K KL+ E + L +K + Y +++ + T
Sbjct: 119 TQKQIEDLKKEKEEMEGSLQGKEKLEREVENL---RKELDKYKDLVETEAEKRAAIT--- 172
Query: 276 YQETVKKDWINLPDSEKAKLEKQAQTLMDKYKK--DLQAWEL 395
+E +K W+ K ++ A T+ K +LQA +L
Sbjct: 173 -KEECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQL 213
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.82
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 271 FSVFPCILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLACAISSLTLFISAF 110
F+V PC L C + Y DI +YS F +L A+ TL IS+F
Sbjct: 417 FNVRPCAEKLLKCFFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTL-ISSF 469
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.82
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 30 MAKEYQKDLEDYNKIKAMYE--TSLTEEQKADIKRVKEE 140
M+++YQK LED K K+ YE +L +++ + K ++E
Sbjct: 464 MSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQE 502
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Frame = +3
Query: 6 LDMETKTQMAKEYQ-------KDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKR 164
+D+E + +A+E Q +D + YN + +M SLT E+ ++ + K+E+ A+
Sbjct: 1123 VDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEV-MAELDA 1181
Query: 165 KLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWIN 308
+K KEL + ++ D+IQ + L+E Q + +D++N
Sbjct: 1182 LIKKTPKELW--LHDLDAFEHAWNKVMDDIQREMLEEEQSS--RDFVN 1225
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +3
Query: 378 LQAWELKMVSIGRTDL--VRSKPAKEKKTKKVDSSQ*ELGCSDDADSILTDSPIVDMKSV 551
L+ W ++ S+ R D+ + P +KK + E G D DS+LT +V+M
Sbjct: 250 LKDWAVQQFSMQRNDVWHLSLMPCFDKKLEASRDEFSENGVRD-VDSVLTPKELVEMFKF 308
Query: 552 QSIDKDVKTSQIIPLNSDS 608
ID T IP +
Sbjct: 309 LRIDPIELTKNPIPFQQST 327
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 36 KEYQKD--LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYK 185
K++Q+ L D + +K + EQ D+KRV EE+++ ++K+ L+++ K
Sbjct: 102 KDWQEGELLPDGSNVKTLSRYPKVLEQ-VDMKRVNEELSKLQDKQILESQQK 152
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/127 (18%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Frame = +3
Query: 21 KTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRP 200
+ + A+ K++E +K SL+ + +A ++ EE+ + ++ +LKA+ +++ +
Sbjct: 21 RAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQL-EELEEETKQLRLKADNEDIQKT 79
Query: 201 KKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLP---------DSEKAKLEKQAQT 353
+ S + + + K L+E E +++ + + E+ +E++ +
Sbjct: 80 EAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEE 139
Query: 354 LMDKYKK 374
+ DKY K
Sbjct: 140 MTDKYTK 146
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 441 AKEKKTKKVDSSQ*ELGCSDDADSILTDSPIVDMKSVQSIDKDVKTSQIIPLNSDSIGKD 620
++E T +S E S+ A+ I + D K + + + K+S+ + SDS +
Sbjct: 26 SREMSTATNNSKNIETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRK 85
Query: 621 QRETDTNHXSTGD 659
ETD + GD
Sbjct: 86 TIETDQPSNNIGD 98
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +3
Query: 9 DMETKTQMAKEYQKDLEDYN----KIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKA 176
D + KE QK+LE YN K + +++T+E + +K ++E + +
Sbjct: 996 DKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSKTNNIDHLS 1055
Query: 177 EYKELGRPK-KPMSSYFIYMQSRKDNIQGKTLKEYQ 281
E R + K + + +++R N+Q T + Q
Sbjct: 1056 TILERNRKEYKSLLDDYNQLRARYKNLQSNTPQSTQ 1091
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 2.5
Identities = 37/185 (20%), Positives = 73/185 (39%)
Frame = +3
Query: 87 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKT 266
+ ++ AD + Q K K ++ K + + K + + M + QG+
Sbjct: 74 QVKANKQVTADDLLEAHSIPQLKNKNDEVSQAKNIPKMKFNTTGFGAKMLEKMGYKQGQG 133
Query: 267 LKEYQETVKKDWINLPDSEKAKLEKQAQTLMDKYKKDLQAWELKMVSIGRTDLVRSKPAK 446
L E + + + E+ L + + K+ + E+ S V+ KP +
Sbjct: 134 LGANAEGIAEPVQSKLRPERVGLGAVRERTEKQRKEAIARGEISD-SEDEKHTVKQKPLR 192
Query: 447 EKKTKKVDSSQ*ELGCSDDADSILTDSPIVDMKSVQSIDKDVKTSQIIPLNSDSIGKDQR 626
EKK K + SS+ E+ S D S + P + + D K + + N + +G + R
Sbjct: 193 EKKKKPLKSSE-EI--SKDMGSY--NLPRFLASLIDASLNDTKEIEFVTSNKEELGLEGR 247
Query: 627 ETDTN 641
+ T+
Sbjct: 248 DMSTS 252
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 2.5
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 36 KEYQKDLED-YNKIKAMYETSLTEEQKADIKRVK---EEMAQAKEKRKLKAEYKELGRPK 203
K + K+ N ++A + + E ++ I+R + EE+A+++E+ + KAE ++ K
Sbjct: 492 KRFDKEASGRINDLRAEQQQIMLEARQKAIERRRNEEEELARSRERARKKAEEIKISSSK 551
Query: 204 KPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKLEKQAQTLMD 362
M+S R N++ K+ + K+ ++ +S + Q T +D
Sbjct: 552 --MNSSPTITNERSSNVESS--KKVEAIYTKEPQSITNSPEGLHSNQETTEID 600
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 27 QMAKEYQKDLEDYNKIKAMY 86
++A ++ +DL DYN IK +Y
Sbjct: 26 EVAVDFDRDLSDYNTIKGVY 45
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 30 MAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKP 209
+ K+ ++ ++ A E +++K ++ + E A E RK + E ELGR +
Sbjct: 21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDA-EYRKAEREQIELGRKARA 79
Query: 210 MSSYFI 227
+Y++
Sbjct: 80 EGNYYV 85
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.3
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +3
Query: 27 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKK 206
+ A+ + ++E K + E + K VKE+ +EKRK K E+ L K
Sbjct: 491 EQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEF--LKAQKN 548
Query: 207 PMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKLEKQAQTLMDKYKKDLQA 386
S+ + K I K QET D I+ ++LE+ + L K+ QA
Sbjct: 549 EASN------NLKQEIVSKA--GAQETENDDLIDEESDALSELEEDYRQLKKSKKRKNQA 600
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +3
Query: 66 NKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSR- 242
NK ++ + AD+ R +EE + K+K K AE + G K S +S+
Sbjct: 1785 NKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAESGKKGGAKGWFSKLLRRDESKD 1844
Query: 243 -----KDNIQGKTLKEYQETVKKDWIN 308
K + K+ Y + +K+ W+N
Sbjct: 1845 QPTVYKAKLGEKSHLHYDKELKR-WVN 1870
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 489 GCSDDADSILTDSPIVDMKSVQSIDKDVKTSQ 584
G SD+ ++L S I +KS + I KDV+ +
Sbjct: 631 GSSDELSTLLERSTIQSIKSSKKISKDVENEK 662
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 36 KEYQKDLEDYNKIKAMYETSLTEEQK-ADIKRVKEEMAQAKEK-RKLKAEYKELGRPKKP 209
+E DLED+ ETS +EE++ ++ + ++E K K RK K + + R K+
Sbjct: 220 EEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRA 279
Query: 210 MSSYFIYMQSRKD 248
+ Y Q R++
Sbjct: 280 PHIHIEYEQEREN 292
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.4
Identities = 26/127 (20%), Positives = 50/127 (39%)
Frame = +3
Query: 6 LDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYK 185
++ E + K +K+ + K + D+ +EE +++ +K K + K
Sbjct: 98 VEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSK 157
Query: 186 ELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKLEKQAQTLMDK 365
+ + I S KD + K KE + KKD EKA ++ ++++
Sbjct: 158 SKDDGSEALDDGDIE-SSEKDKKKKKKSKENDDAPKKDRKTRKKEEKA---RKLASMLES 213
Query: 366 YKKDLQA 386
KD A
Sbjct: 214 ENKDNDA 220
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 111 KADIKRVKEEMAQAKEKRKLKAEYKELGRPKK 206
+ D + +EE A+ KE+ +L+ E ++ G P+K
Sbjct: 651 EVDFQTEREENARKKEELRLRFEEEDRGDPEK 682
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 132 KEEMAQAKEKRKLKAEYKELGRPK--KPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWI 305
+E + A E+RK + E +E P+ P + ++ + D+ + K YQ +
Sbjct: 43 QESIKAAIEQRKSEIEEEEDIDPRYQDPDNEVALFATAPYDHEDEEADKIYQSVEE---- 98
Query: 306 NLPDSEKAKLEKQAQTLMDKYKKD 377
+L K++ EKQ Q +KY+K+
Sbjct: 99 HLSKRRKSQREKQEQLQKEKYEKE 122
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/82 (19%), Positives = 30/82 (36%)
Frame = +3
Query: 57 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQ 236
E+ + + L E Q + ++ E Q K+K ++ + GR P S +
Sbjct: 696 EEVDLVSEPIPEPLRERQSQLLYEIEAEECQNKQKELIEKSLMQKGRSLSPKKSNAFFDS 755
Query: 237 SRKDNIQGKTLKEYQETVKKDW 302
+ K K+Y + W
Sbjct: 756 KKIREELKKVKKKYGSSFNSRW 777
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +3
Query: 87 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAE-------YKELGRPKKPM 212
ETSLTEEQK ++ +++ A + + E ++L +P +P+
Sbjct: 807 ETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTSIPSLRDLHKPTRPL 855
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 594 LNSDSIGKDQRETDTNHXSTGDQVVYDK 677
LN DS K RET T+ T + VYDK
Sbjct: 1036 LNLDSDKKFVRETYTSSNQTNEPDVYDK 1063
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 63 YNKIKAMYETSLTEEQKADIK-RVKE--EMAQAKEKRKLKAEYKELGRPKKP 209
Y K K+ + + Q K R KE E+A +++R+L A KEL +P
Sbjct: 190 YGKKKSTEPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEANRP 241
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 117 DIKRVKEEMAQAKEK-RKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVK 293
++KR +E A K K +K K E+K+ + K I + +K + +GK+ K +E+++
Sbjct: 57 ELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKS-KTKEESIE 115
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 498 DDADSILTDSPIVDMKSVQSIDKDVKTSQIIPLNSDSIGKDQRE 629
D A S+L + + ++ + ID KTS ++ L++DS Q+E
Sbjct: 274 DTAASVLAE--LFGSENTEEIDTVSKTSGVLELDNDSTNNFQKE 315
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 9 DMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQ 110
D + + KE +DLE N + A E +L EEQ
Sbjct: 1608 DAKLMEKTLKEVIEDLEKNNSLHAYEEEALNEEQ 1641
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/80 (20%), Positives = 40/80 (50%)
Frame = +3
Query: 36 KEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMS 215
+ + ++L + +I+A + EE++ K + E+ + KE+ +L E K ++ +
Sbjct: 111 ERFNRELLEKKRIEAERQRLKDEEERRK-KELMEKEKKEKERIRLIEEQKHKENEQRRLK 169
Query: 216 SYFIYMQSRKDNIQGKTLKE 275
I + +++ + K +KE
Sbjct: 170 QEQIDAKRKEEEAREKRMKE 189
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 3 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEY 182
+++ E ++ ++KE + E + ET TEE K + AKE+ KL
Sbjct: 96 EIEKENESIISKETSQAPETSTGAEEHQET--TEESKQSVSNEVSSPDVAKEQEKLIQRA 153
Query: 183 KELGRP 200
K G P
Sbjct: 154 KRFGIP 159
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 39 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE-MAQAKEKRKLKAEYKELGR 197
EY DLE+ K+K L ++ D ++ ++ + +A++ + +E K++ R
Sbjct: 99 EYLNDLEELKKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQKGSELKKMCR 152
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 253 ILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLAC--AISSLTLFISAFCSSV 98
+L+ L Y+KY+D F ++ ++ F F + L C A+ LT F + +V
Sbjct: 86 VLNVLAICYLKYKDAFFKNYGAAEWTLFGF-WCLVCTLALIFLTYFYETWTKAV 138
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 27 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKL 170
+++++ +DL D K++ ETS T + ++ E++ Q K+ RKL
Sbjct: 679 EISRKMFEDLADL-KVRRNPETSRTVMDRRTFQQTLEKLMQEKKVRKL 725
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 57 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRK 167
+ Y K A Y ++ +E+ KR K + ++K KRK
Sbjct: 453 KQYEKTIASYSSNQRQEEDQGKKRKKRKKKKSKGKRK 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,957
Number of Sequences: 5004
Number of extensions: 48054
Number of successful extensions: 223
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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