Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m04
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 25 0.88
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.5
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 2.0
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 2.0
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 24.6 bits (51), Expect = 0.88
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 442 PKRRKPKKLIVHNRNSGALMMLIPYLPIRQLSI*NQYKALI 564
PK+ KPK ++H GA ++ + I+ ++I ++Y +I
Sbjct: 433 PKQNKPK--VLHAIRRGASILRVSMPKIKDVNIIDKYSRII 471
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.8 bits (49), Expect = 1.5
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 TEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGK-TLKE 275
+ E+ R +E + + KL E ++L + Y + + + + + + ++
Sbjct: 232 SRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRK 291
Query: 276 YQETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
Y+ET K+ + + E++K K +L + YK
Sbjct: 292 YRETSKERSRDRKERERSKEPKIISSLSNNYK 323
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQG-KTLKEYQ 281
E+ R +E + + KL E ++L + + Y + +++ + + ++Y+
Sbjct: 1 ERSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E+ K K +L + YK
Sbjct: 61 ETSKERSRDRTERERCKEPKIISSLSNNYK 90
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 153 KEKRKLKAEYKELGRPKKPMSSYFIYMQSR----KDNIQGKTLKEYQETVKKDWINLPDS 320
K+ R+ + Y E + + +S Y +SR K + +EY+ET ++ + +
Sbjct: 14 KKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKER 73
Query: 321 EKAKLEKQAQTLMDKYK 371
E++K K +L + YK
Sbjct: 74 ERSKEPKIISSLSNNYK 90
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 153 KEKRKLKAEYKELGRPKKPMSSYFIYMQSR----KDNIQGKTLKEYQETVKKDWINLPDS 320
K+ R+ + Y E + + +S Y +SR K + +EY+ET ++ + +
Sbjct: 14 KKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKER 73
Query: 321 EKAKLEKQAQTLMDKYK 371
E++K K +L + YK
Sbjct: 74 ERSKEPKIISSLSNNYK 90
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 153 KEKRKLKAEYKELGRPKKPMSSYFIYMQSR----KDNIQGKTLKEYQETVKKDWINLPDS 320
K+ R+ + Y E + + +S Y +SR K + +EY+ET ++ + +
Sbjct: 14 KKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKER 73
Query: 321 EKAKLEKQAQTLMDKYK 371
E++K K +L + YK
Sbjct: 74 ERSKEPKIISSLSNNYK 90
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 153 KEKRKLKAEYKELGRPKKPMSSYFIYMQSR----KDNIQGKTLKEYQETVKKDWINLPDS 320
K+ R+ + Y E + + +S Y +SR K + +EY+ET ++ + +
Sbjct: 14 KKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKER 73
Query: 321 EKAKLEKQAQTLMDKYK 371
E++K K +L + YK
Sbjct: 74 ERSKEPKIISSLSNNYK 90
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 23.4 bits (48), Expect = 2.0
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 105 EQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGK-TLKEYQ 281
E+ R +E + + KL E ++L + Y + + + + + + ++Y+
Sbjct: 1 ERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYR 60
Query: 282 ETVKKDWINLPDSEKAKLEKQAQTLMDKYK 371
ET K+ + + E++K K +L + YK
Sbjct: 61 ETSKERSRDRKERERSKEPKIISSLSNNYK 90
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,000
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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