Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m03
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...   147   1e-36
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    55   1e-08
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    28   1.6  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   3.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.4  

>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score =  147 bits (357), Expect = 1e-36
 Identities = 67/147 (45%), Positives = 96/147 (65%)
 Frame = +3

Query: 129 IGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQSTKFGAMLDQLTDR 308
           +GF RV L +IS YFM  H       Y+ S+LLDA DG AAR  +Q+T FGA+LD +TDR
Sbjct: 33  LGFTRVFLVLISLYFMSWHPNYCTIVYLYSSLLDAFDGWAARKLHQATNFGAILDMVTDR 92

Query: 309 AGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKASHKFIDMSENPIMRA 488
             TSCLL  L   YP+Y   FQL +++D+  H++++++++ QG +SHK +    N ++R 
Sbjct: 93  CATSCLLCFLCAAYPKYAIIFQLLVSLDLASHYMHMYSTLHQGASSHKTVTKKHNWMLRL 152

Query: 489 YYTNKWLLFYMCACNEAFYASLYVLHF 569
           YY N  +LF  CA NE F+ +LY+L F
Sbjct: 153 YYGNNKVLFIFCAANEMFFVALYLLSF 179


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
 Frame = +3

Query: 69  NKTFIMAEVKENIFLFVPNLIGFARVILA-IISFYFMPTHCILACSCYIISALLDAVDGH 245
           N   I   ++ENIF  +PNL+ F+R++ A +I++ ++  +   A   ++ +   D VDG+
Sbjct: 386 NSKPIQRPLRENIFT-LPNLLTFSRLLSAPLIAYLYIYDYTKAAACFFLYAGFTDLVDGY 444

Query: 246 AARYFNQSTKFGAMLDQLTDRAGTSCLLVTLA 341
            AR F+  +  G +LD L D+   +CL + LA
Sbjct: 445 IARKFDLGSIAGTVLDPLADKTLMTCLTICLA 476


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +3

Query: 267 STKFGAMLDQLTDRAGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKAS 446
           S +FG  +DQL+  AG S       T +P Y F     + +D T  +   H   LQ K +
Sbjct: 136 SERFGLQMDQLSRLAGHSEPRTHRGT-HPDYPFKPLAFVLVDQTEKFAASHPDRLQIKKN 194

Query: 447 HKFIDMSENP 476
            +   +  NP
Sbjct: 195 ARVTRLLTNP 204


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 255 YFNQSTKFGAMLDQLTDRAGTSCLLVTLAT 344
           YF+++ +F A+  +L DR GT+ ++  L T
Sbjct: 157 YFSETLEFQALAYRLKDRFGTNSIIQELIT 186


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 459 DMSENPIMRAYYTNKWLLFYMCACNEAFYASLYV 560
           D + +P+ +A +T   ++ +   CN+  YAS+++
Sbjct: 66  DKTYSPLFKAGHTTWRIVLFPKGCNQTEYASVFL 99


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = +3

Query: 318  SCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKASHKFIDMSENPIMRAYYT 497
            SCLLV+L      Y     ++  + V CH L    S     A    I++ +  + R + +
Sbjct: 1752 SCLLVSLPAMVYTYEHSDPITFDLSVFCHKLATLASQFNDDA---LIELLDTYLKRKFRS 1808

Query: 498  NKWLLFYMCACNEAFYASLYVLHFYSGPTI 587
             K  L +  +   ++Y   Y L   S  T+
Sbjct: 1809 IKDFLKHTVSYLYSYYFEDYELEIVSTLTM 1838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,709
Number of Sequences: 5004
Number of extensions: 70374
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)