Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m03
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0113 - 16786063-16786131,16786229-16786327,16786413-167864...    41   9e-04
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    41   9e-04
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    37   0.014
02_01_0180 - 1231444-1231497,1231789-1231887,1231974-1232100,123...    35   0.058
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    31   1.2  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    31   1.2  
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332...    30   2.2  
05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022     29   2.9  
01_06_0016 - 25590912-25591478                                         29   3.8  

>06_03_0113 -
           16786063-16786131,16786229-16786327,16786413-16786469,
           16786795-16786909,16787331-16787413,16787481-16787531,
           16787914-16787951,16788153-16788213
          Length = 190

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 38/170 (22%), Positives = 71/170 (41%)
 Frame = +3

Query: 87  AEVKENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQ 266
           +E   +++L++PN+IG+ R+I+  I+F  M    +   S     A+LD  +         
Sbjct: 6   SEKTPSVYLYIPNIIGYFRIIINFIAFALM----LFYVSASTFGAVLDMPE--------- 52

Query: 267 STKFGAMLDQLTDRAGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKAS 446
                ++   L  R  T+CLL  L+  Y  +                       L GK S
Sbjct: 53  ---IISLFKLLLLRVSTACLLALLSQLYSMF-----------------------LSGKTS 86

Query: 447 HKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGPTILGV 596
           HK +  + N +++ YY ++  + + C  +E  Y  L++       ++L V
Sbjct: 87  HKDVKDTGNWLLKLYYGHRPFMAFCCVASEVLYIILFLFADEKSTSLLNV 136


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 111 LFVPNLIGFARV--ILAIISFYFM--PTHCILACSCYIISALLDAVDGHAARYFNQSTKF 278
           L +P ++   RV  +  +IS ++M  P         ++ +A+ D +DG+ AR     T F
Sbjct: 135 LTLPTVLTIGRVAAVPLLISTFYMEGPWAATATTGIFLAAAVTDWLDGYIARKMQLGTPF 194

Query: 279 GAMLDQLTDRAGTSCLLVTLAT 344
           GA LD + D+   +  LV L T
Sbjct: 195 GAFLDPVADKLMVAATLVLLCT 216


>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 108 FLFVPNLIGFARVILA-IISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQSTKFGA 284
           FL +PNL+   R+    +I +  +    + A     +S   D +DG  AR    ++ FG+
Sbjct: 134 FLNLPNLVSIGRMASGPVIGWMIVNEWYLPAFGTLALSGASDWLDGFLARKMGINSVFGS 193

Query: 285 MLDQLTDRAGTSCLLVTL 338
            LD L D+    C+ + +
Sbjct: 194 YLDPLADKVLIGCVAIAM 211


>02_01_0180 -
           1231444-1231497,1231789-1231887,1231974-1232100,
           1232430-1232443,1232700-1232765,1232991-1233041,
           1233255-1233314,1233383-1233412,1233430-1233467,
           1233669-1233729
          Length = 199

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
 Frame = +3

Query: 102 NIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAA-----RYFNQ 266
           +++L++PN+IG+ R+I+  I+F     + IL  +    SA+   V  H +      ++  
Sbjct: 11  SVYLYIPNIIGYFRIIINFIAFAGALCYPILLQNLSAFSAMAWMVGLHESLTKLMPFYVS 70

Query: 267 STKFGAMLD 293
           ++ FGA+LD
Sbjct: 71  ASTFGAVLD 79


>06_03_1457 -
           30287185-30287287,30287691-30287759,30288212-30288351,
           30288447-30288641,30288743-30289363,30289688-30290257,
           30290332-30293638,30293764-30293863,30293978-30295014,
           30295256-30295604,30296299-30296374,30296456-30297022,
           30297094-30297238,30298281-30298405,30298491-30298582,
           30298646-30298828,30298946-30299058,30299499-30299649,
           30299720-30299882
          Length = 2701

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +3

Query: 531 NEAFYASLYVLHFYSGPTILGVELYRLIAMVTMPTAIVKTGISVLHGFVASLNLATIDVN 710
           NEA   SL ++  YSGP +LG    +L  + T+    +   I++  GF++ LN  T D  
Sbjct: 629 NEALM-SLPIIVLYSGPRMLGAMFRKLETIGTLGCKKLWKSIAISLGFLSCLN-GTTDCT 686

Query: 711 ER 716
           ++
Sbjct: 687 DK 688


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 186 CILACSCYIISALLDAVDGHAARYFNQSTKFGAMLDQLTDRAG 314
           C+   + Y    L    +GH AR F    +F AMLD++   AG
Sbjct: 757 CVKEVTEYFHGELSSGDEGHMARVFGSVREFLAMLDRICKEAG 799


>04_03_0743 +
           19231835-19232204,19232889-19233061,19233200-19233297,
           19233970-19234107,19234266-19234455,19234875-19235007,
           19235095-19236029
          Length = 678

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 ILAIISFYFMPTHCILACSCYIISALL 227
           IL +  F  +P HC+  CS + ++A+L
Sbjct: 554 ILGVEGFSALPQHCLAICSVFFVAAIL 580


>05_03_0492 - 14688449-14689445,14689910-14690070,14690690-14691022
          Length = 496

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 75  TFIMAEVKENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAA 251
           TFI+A+ ++ + +  P   GF R +        +P HC  A    + +A L A    AA
Sbjct: 146 TFILADPRDALLIPTPYYPGFDRDLRWRTGVNVVPVHCDSANGFQVTAAALQAAHDEAA 204


>01_06_0016 - 25590912-25591478
          Length = 188

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 399 KSHQWLEIAGTRMCIGDRMS-RESPRGKRCQLCRSIDQ-ALHQI 274
           K H WL I   R+   DR++ RE     +C LCR  D+ ALH +
Sbjct: 53  KLHAWL-IIQNRVWTSDRLTNREWQNNGQCPLCRREDETALHLV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,652,586
Number of Sequences: 37544
Number of extensions: 461970
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)