Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m03
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094866-1|AAM11219.1|  224|Drosophila melanogaster RE35104p pro...   266   2e-71
AE014298-2191|AAF48491.2|  224|Drosophila melanogaster CG9245-PA...   266   2e-71
AE014298-2192|AAN09359.1|   81|Drosophila melanogaster CG9245-PB...    85   1e-16
AE013599-1723|AAF58369.1|  417|Drosophila melanogaster CG6016-PB...    34   0.23 
AE013599-1722|AAF58370.1|  417|Drosophila melanogaster CG6016-PA...    34   0.23 

>AY094866-1|AAM11219.1|  224|Drosophila melanogaster RE35104p
           protein.
          Length = 224

 Score =  266 bits (652), Expect = 2e-71
 Identities = 121/206 (58%), Positives = 163/206 (79%)
 Frame = +3

Query: 99  ENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQSTKF 278
           +N+F+FVPNLIG+AR++LA+I+F+FM T+ +++  CY+ SALLDAVDG AAR FNQST+F
Sbjct: 7   DNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLDAVDGQAARAFNQSTRF 66

Query: 279 GAMLDQLTDRAGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKASHKFI 458
           GAMLDQLTDR GT+ LLVTLA FYP+Y FWFQLS+AIDV CHWL++ TS++ G++SHK  
Sbjct: 67  GAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLSIAIDVACHWLFMQTSVVVGRSSHK-- 124

Query: 459 DMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGPTILGVELYRLIAMVTMPTA 638
            +++N IMR YY  K +L +MC  NE FY  LY+LHF  GP I G  L++++A +T P A
Sbjct: 125 -VNDNFIMRLYY-QKDILTFMCCVNELFYVCLYLLHFTYGPLIFGASLFKILAFLTGPFA 182

Query: 639 IVKTGISVLHGFVASLNLATIDVNER 716
           ++K  ISV+H +VA ++LA +DV ER
Sbjct: 183 VLKALISVMHAYVAGIDLAAVDVRER 208


>AE014298-2191|AAF48491.2|  224|Drosophila melanogaster CG9245-PA,
           isoform A protein.
          Length = 224

 Score =  266 bits (652), Expect = 2e-71
 Identities = 121/206 (58%), Positives = 163/206 (79%)
 Frame = +3

Query: 99  ENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQSTKF 278
           +N+F+FVPNLIG+AR++LA+I+F+FM T+ +++  CY+ SALLDAVDG AAR FNQST+F
Sbjct: 7   DNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLDAVDGQAARAFNQSTRF 66

Query: 279 GAMLDQLTDRAGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKASHKFI 458
           GAMLDQLTDR GT+ LLVTLA FYP+Y FWFQLS+AIDV CHWL++ TS++ G++SHK  
Sbjct: 67  GAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLSIAIDVACHWLFMQTSVVVGRSSHK-- 124

Query: 459 DMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGPTILGVELYRLIAMVTMPTA 638
            +++N IMR YY  K +L +MC  NE FY  LY+LHF  GP I G  L++++A +T P A
Sbjct: 125 -VNDNFIMRLYY-QKDILTFMCCVNELFYVCLYLLHFTYGPLIFGASLFKILAFLTGPFA 182

Query: 639 IVKTGISVLHGFVASLNLATIDVNER 716
           ++K  ISV+H +VA ++LA +DV ER
Sbjct: 183 VLKALISVMHAYVAGIDLAAVDVRER 208


>AE014298-2192|AAN09359.1|   81|Drosophila melanogaster CG9245-PB,
           isoform B protein.
          Length = 81

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 35/57 (61%), Positives = 50/57 (87%)
 Frame = +3

Query: 99  ENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQS 269
           +N+F+FVPNLIG+AR++LA+I+F+FM T+ +++  CY+ SALLDAVDG AAR FNQ+
Sbjct: 7   DNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLDAVDGQAARAFNQT 63


>AE013599-1723|AAF58369.1|  417|Drosophila melanogaster CG6016-PB,
           isoform B protein.
          Length = 417

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
 Frame = +3

Query: 186 CILACSCYIISALLDAVDGHAARYFNQSTKFGAMLDQLTDRAGT------SCLLVTLATF 347
           C+L      I   LD++DG  AR  N S+  G + D   D   T      +C+   L   
Sbjct: 88  CLLCALGLFIYQSLDSIDGKQARRTNTSSPLGELFDHGCDSISTVFVALSACISCQLG-H 146

Query: 348 YPQYTFWFQ--LSLAIDVTCHW-LYLHTSMLQGK 440
           YP + F FQ   ++A+    HW  Y+  +M  G+
Sbjct: 147 YPNWLF-FQCFCAIALFYCAHWQTYVSGTMRFGR 179


>AE013599-1722|AAF58370.1|  417|Drosophila melanogaster CG6016-PA,
           isoform A protein.
          Length = 417

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
 Frame = +3

Query: 186 CILACSCYIISALLDAVDGHAARYFNQSTKFGAMLDQLTDRAGT------SCLLVTLATF 347
           C+L      I   LD++DG  AR  N S+  G + D   D   T      +C+   L   
Sbjct: 88  CLLCALGLFIYQSLDSIDGKQARRTNTSSPLGELFDHGCDSISTVFVALSACISCQLG-H 146

Query: 348 YPQYTFWFQ--LSLAIDVTCHW-LYLHTSMLQGK 440
           YP + F FQ   ++A+    HW  Y+  +M  G+
Sbjct: 147 YPNWLF-FQCFCAIALFYCAHWQTYVSGTMRFGR 179


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,732,256
Number of Sequences: 53049
Number of extensions: 794337
Number of successful extensions: 2082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)