Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m03
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical ...   197   6e-51
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024761-3|AAF59465.1|  159|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    29   4.5  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical
           protein Y46G5A.5 protein.
          Length = 220

 Score =  197 bits (481), Expect = 6e-51
 Identities = 96/213 (45%), Positives = 131/213 (61%)
 Frame = +3

Query: 87  AEVKENIFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQ 266
           AE   N++LF PNLIG+ R++LAI++ Y+M +    A  CY +SA LDA DG AAR +NQ
Sbjct: 6   AENNNNVWLFYPNLIGYGRIVLAILAMYYMSSAPWCAMFCYALSAGLDAFDGWAARTYNQ 65

Query: 267 STKFGAMLDQLTDRAGTSCLLVTLATFYPQYTFWFQLSLAIDVTCHWLYLHTSMLQGKAS 446
           S++FGAMLDQLTDR     L++ L  FYP + F  QLS  ID+  HWL+LH + L G  S
Sbjct: 66  SSRFGAMLDQLTDRCALLALVMALCKFYPDHLFLLQLSAVIDIASHWLHLHATDLSGATS 125

Query: 447 HKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGPTILGVELYRLIAMVT 626
           HK    S N ++  YYT++  L +MC  NEAFY  LY+  F++GP I       +  ++ 
Sbjct: 126 HK---QSSNWLLNLYYTDRLFLGFMCGGNEAFYILLYIRAFWAGPLIFNFHFMSIFPLIA 182

Query: 627 MPTAIVKTGISVLHGFVASLNLATIDVNERAAA 725
            P A VK+ ISV+H + A+  +   DV  R  A
Sbjct: 183 FPIAFVKSAISVVHLYTAAEMVVAHDVKLRVEA 215


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +3

Query: 105 IFLFVPNLIGFARVILAIISFYFMPTHCILACSCYIISALLDAVDGHAARYFNQSTKFGA 284
           IF F      F R  +   +    PT+C + C     +A  D  +     YF +  KF  
Sbjct: 494 IFAFFDKNCYFNRTYVTSETMKSWPTNCSMVCGDLYFNANTDLTEDQLRTYFAKQNKFKG 553

Query: 285 ML 290
           ML
Sbjct: 554 ML 555


>AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical
           protein F56A4.10 protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 540 FYASLYVLHFYSGPTILGVELYRLIAMVTMPTAIVKTGISVL 665
           F+AS++ +   +G  ++     R+IA +    AIV +G++++
Sbjct: 294 FFASIFQIGLVAGLVVMAFTTNRVIAQIAFNFAIVSSGLNIM 335


>AC024761-3|AAF59465.1|  159|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.7 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 507 LLFYMCACNEAFYASLYVLHFYSGPTILGVELYRL 611
           +L ++C    AF++   ++H  +    LG+E+Y L
Sbjct: 99  VLVFLCVSGHAFFSLFVLIHVLAAVGQLGIEVYEL 133


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 540 FYASLYVLHFYSGPTILGVELYRLIAMVTMPTAIVKTGISVLHGF 674
           F+A+   + F +G  ++     RLIA +    AIV +G++V+  F
Sbjct: 574 FFAATSQIGFVAGLLVMAFTTNRLIAQIAFNFAIVSSGMNVMGVF 618


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 540 FYASLYVLHFYSGPTILGVELYRLIAMVTMPTAIVKTGISVLHGF 674
           F+A+   + F +G  ++     RLIA +    AIV +G++V+  F
Sbjct: 617 FFAATSQIGFVAGLLVMAFTTNRLIAQIAFNFAIVSSGMNVMGVF 661


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 447 HKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFY---SGPTILGVELYRLIA 617
           H+  +MS  P  + Y +    L   C     FY  +Y L++Y   +G  IL +E + L+ 
Sbjct: 222 HQMENMSA-PRQQLYKSFVMGLTIQCVLPYVFYIPIYTLYYYCLLTGEEILFLEFF-LVL 279

Query: 618 MVTMPTAI 641
           +  +PT +
Sbjct: 280 IPALPTLV 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,045
Number of Sequences: 27780
Number of extensions: 408435
Number of successful extensions: 911
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)