Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29m03
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           24   1.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 515 EKEPLVGVIGTHDR 474
           EK P +G++GTH R
Sbjct: 88  EKNPKLGILGTHGR 101


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 515 EKEPLVGVIGTHDR 474
           EK P +G++GTH R
Sbjct: 89  EKNPKLGILGTHGR 102


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 551 RCVEGFIASTHIEKEPLVGVIGTHDRILRHVNE 453
           RC +G +     EKE L  ++G +D  +R   E
Sbjct: 20  RCTQGKVNYREKEKEVLDNILGGYDARIRPSGE 52


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 551 RCVEGFIASTHIEKEPLVGVIGTHDRILRHVNE 453
           RC +G +     EKE L  ++G +D  +R   E
Sbjct: 20  RCTQGKVNYREKEKEVLDNILGGYDARIRPSGE 52


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 409 CTFIRQCSRARLHINSLTCLRILSCVPI 492
           CT  +QCS  R++ N     R+  C+ +
Sbjct: 55  CTKNQQCSILRINRNRCQYCRLKKCIAV 82


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 409 CTFIRQCSRARLHINSLTCLRILSCVPI 492
           CT  +QCS  R++ N     R+  C+ +
Sbjct: 104 CTKNQQCSILRINRNRCQYCRLKKCIAV 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 302 GQLIKHCTKFSTLIKVPGCMTVH 234
           G+L+ H  +FS  I    C T+H
Sbjct: 191 GELLVHSLEFSDQIHGYRCRTMH 213


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 302 GQLIKHCTKFSTLIKVPGCMTVH 234
           G+L+ H  +FS  I    C T+H
Sbjct: 191 GELLVHSLEFSDQIHGYRCRTMH 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,159
Number of Sequences: 438
Number of extensions: 5121
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)