Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m01
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 42 1e-04
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.16
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 30 0.29
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.87
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 28 1.5
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 28 1.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.0
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 27 2.7
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 27 3.5
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51... 26 4.7
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 26 6.1
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.1
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 41.5 bits (93), Expect = 1e-04
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +3
Query: 234 SYDENGDNFQRLSQTIASNIKKIS-QNVSSMSKMVN-QL-QTPQDSQELRAQLRQIQNYT 404
S DE ++++ L + +AS KKI QNVSS + N QL Q+ L+++ + +
Sbjct: 738 SKDELDESYKSLQEQLAS--KKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVK 795
Query: 405 QKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQA 536
KL D S+L +L + +DN K E + EY AT++S +
Sbjct: 796 DKLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTATVDSMNS 839
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 31.1 bits (67), Expect = 0.16
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Frame = +3
Query: 261 QRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQ--ELRAQLRQIQNYTQKLAKDTSSL 434
++LS + N K +S VSS++K VN+L +P+ S+ EL ++ + + +L K
Sbjct: 1217 EKLSLASSEN-KDLSNKVSSLTKQVNEL-SPKASKVPELERKITNLMHEYSQLGKTFEDE 1274
Query: 435 LMELMRMPKDN------AANKLTRERLSDEYIATLNSFQATQRLVAQKTKEDVKKAKAQS 596
+ + +DN + ++ +L EY L + T+ L ++ T K A +S
Sbjct: 1275 KRKALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVKTTRSLRSEVTLLRNKVADHES 1334
Query: 597 I 599
I
Sbjct: 1335 I 1335
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 457 LKIMLPTNLPENDSVMSILPLLIVSRQHND 546
LK LPT EN S+ S+LP+++ S+ +D
Sbjct: 724 LKAHLPTIFDENKSLYSLLPVILFSKPEDD 753
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.87
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 276 TIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLME 443
T+ N+KK Q S+ N+LQ DS+E +R+I N LAK +SL++E
Sbjct: 627 TLQHNLKKSFQ--FSLWDFFNELQPDDDSEEREISMRRIVN----LAKLYASLVIE 676
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +3
Query: 240 DENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAK 419
+EN ++ Q S +++ SQN +KM ++Q + ++ + ++ +
Sbjct: 45 EENKESLQNDSHSVSQKSSSSSQNDQGSNKM-TRIQQKIQERNFEKAIKASEAAAKEESL 103
Query: 420 DTSSLLMELMRMPKDNAANKLTRERLSDEYIATLN-SFQATQRLVAQKTKED 572
++S M + D AN + + D+ A+ N S QA QR + KTK D
Sbjct: 104 ESSKEAMRQAEIDSD-LANAMDLFDIVDKNSASANRSKQADQRQL--KTKAD 152
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 420 DTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRL 548
D + + LM + KD A+ LTRE L+DE A + + +RL
Sbjct: 207 DPAEIRFNLMVICKDKKASLLTREDLTDEEKAASIAVEDEKRL 249
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +3
Query: 252 DNFQRLSQTIASNIKKISQNVSSMSKMV-NQLQTPQDS--QELRAQLRQIQNYTQKLAKD 422
D++ + S + + ++ +N ++ S ++ NQL T + S + + +L+ NY ++L K
Sbjct: 515 DSYHKYSG-VRTKLQVFEENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYNEELDKL 573
Query: 423 TSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTK 566
+ +L + ++ + RERL ++ S KTK
Sbjct: 574 VEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDLTENKKIKTK 621
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 2.7
Identities = 24/117 (20%), Positives = 56/117 (47%)
Frame = +3
Query: 225 GGVSYDENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYT 404
GG+ D+ + + I + + Q V S+++ + T +++ + A++ +++
Sbjct: 125 GGIMQAARNDHTSAIRERI-DQVASL-QEVESVTQAL--FHTSKETARMEAEIFELEQRV 180
Query: 405 QKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTKEDV 575
LAK+ S+L + + A + +ERL ++ +A +NS +TQ+ E +
Sbjct: 181 A-LAKEAKSVLDSWVHHEANVRAEQ--QERLVEDVLARVNSKVSTQKFQQDALNESL 234
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 405 QKLAKDTSSLLMELMRMPKDNA-ANKLTRERLSDEYIATLNSF 530
QK+ D + LM+ +R+PK+ +LS E A+ N F
Sbjct: 325 QKMVLDQADFLMKYLRIPKEGLYYRNFGLYKLSPELTASFNKF 367
>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
L51-b|Schizosaccharomyces pombe|chr 2|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +1
Query: 214 RLIKEVCHTMRMEITFNDFLKLSPVILRKY 303
R +K + + +++ + ND+ ++SP +L+KY
Sbjct: 86 RTLKRI-YDLKLPVPLNDYEQISPYLLQKY 114
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +3
Query: 210 EASYQGGVSYDENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQ 389
E S G+S ENG ++ + N+K +N + + +V Q D L+ L
Sbjct: 189 EISLMEGLSSIENGYPDEKETLAALDNVKLSDENAAHLGYLVKYFQNYTDKIILKETLMD 248
Query: 390 IQNYTQKLAKDTSS 431
++ L + T S
Sbjct: 249 WEDKEPSLQELTES 262
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = +3
Query: 390 IQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTKE 569
I + Q++ K T ++ + M +N+ S IA L + TQ+ +++K K
Sbjct: 240 IASNLQEIKKGTKEYSLKSLEMTTTKESNETLCSNDSKHRIARLKNEDNTQKPISKKRKS 299
Query: 570 DVKKAKAQSINIGDPFAMGNSNKD 641
K S GN K+
Sbjct: 300 KKASHKYLSSRTAPNVDFGNFAKE 323
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 147 NGLYSSSHTLQSYDRKQSNAEYAT 76
+GL SSS T+ S R +SN+E A+
Sbjct: 991 SGLTSSSSTIPSSTRSESNSESAS 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,315
Number of Sequences: 5004
Number of extensions: 59735
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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