Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m01
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847... 61 1e-09
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 38 0.006
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 2.1
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406... 28 6.4
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 28 6.4
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 6.4
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 6.4
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 28 8.5
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 28 8.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 8.5
>01_01_1076 -
8474869-8474934,8475028-8475128,8475248-8475405,
8475554-8475628,8476528-8476667,8477284-8477377,
8478063-8478271
Length = 280
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = +3
Query: 270 SQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLL---M 440
SQ +AS + +I+ VS+ ++VN L TP+D+ +LR ++ + + + +L KDTS L
Sbjct: 33 SQAVASGVFQINTAVSTFQRLVNTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLKQAS 92
Query: 441 ELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQK 560
E + +A+ K+ +L+ ++ A L FQ QRL ++
Sbjct: 93 EADHRVEVSASKKIADAKLAKDFQAVLKEFQKAQRLAVER 132
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/92 (27%), Positives = 46/92 (50%)
Frame = +3
Query: 297 KISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAAN 476
+I+ V+S +++N L TP+D+ LR QL++ + +LAKD L K+ A+
Sbjct: 29 QITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKN--AD 86
Query: 477 KLTRERLSDEYIATLNSFQATQRLVAQKTKED 572
E + D+ ++ A +R+ K +D
Sbjct: 87 TSPSEFVLDKTVSNYMCDHADKRVADMKLAKD 118
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 2.1
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Frame = +3
Query: 195 IVVKMEASYQGGVSYDENGDNFQRLSQTIASNIKKISQNV-SSMSKMVNQLQTPQDSQEL 371
+ + E + S E G+ + +Q I SN+++ +N+ ++ + M N+L Q+ E
Sbjct: 777 LAMVQEQKNEAVASTVELGNKLEEQNQQI-SNLQEAVENLEAAKTDMYNELTVCQE--EK 833
Query: 372 RAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLV 551
A L Q+Q L S L + ++ AN+ RE++S S +
Sbjct: 834 NAALLQVQQLEANLKNLESELEQKQSQVSALEQANEELREKIS--------SLERQLEEA 885
Query: 552 AQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMN 689
K ++++ K + + D N++ ++ E ++ KQ + N
Sbjct: 886 RSKLQDEIIKLQGEKERALDNLQQSNTS---IKTFEEELEKQREHN 928
>11_01_0519 +
4066776-4066892,4067042-4067099,4067322-4067608,
4067706-4067822,4067898-4067958,4068042-4068133,
4068547-4068632,4068926-4068975,4069077-4069117,
4069222-4069392,4069875-4069942,4070088-4070148,
4070471-4070757,4072008-4072172,4072759-4072760,
4072829-4073139,4073600-4073787,4075231-4075482,
4076035-4076114,4076199-4076399,4076959-4077014,
4077137-4077328
Length = 980
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 99 VFYHSSVVYGKKNTNHYFN*HKTIHTHHLFQFIVVKMEASYQGGV 233
VF+H+S + K + HK H+++ +++V ME Y G V
Sbjct: 227 VFHHTSHPWSKNKILIWMY-HKLPHSYNFHKYMVRSMEDDYNGSV 270
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 246 NGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAKDT 425
N DNF ++ +K S N SS+ + LQTP D +E+ +Q+ L K
Sbjct: 428 NADNFDLGLESKQDIVKPSSSNPSSVG---DDLQTPDDDKEISLIDMSLQDTDMSLKKKE 484
Query: 426 SS 431
S
Sbjct: 485 GS 486
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 225 GGVSYDENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQ 356
GG+S D GD+F+ +A NI S S V+ Q PQ
Sbjct: 1141 GGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDYSQGPQ 1184
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 489 ERLSDEYIATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDV 668
E + DEY L S TQR + + KK K Q I+ A+ + +K++ + E +
Sbjct: 355 ETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHISDAVDKAVNDKSKEIQQKIENAM 414
Query: 669 RKQEQM 686
+++++
Sbjct: 415 LEKKKL 420
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 252 DNFQRLSQTIASNIKKI-SQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYT 404
DN+ + S+ +A NI+ + S++ ++ K+++ +Q P+ + + R N+T
Sbjct: 426 DNYIQFSELLARNIRPVDSKDAAATDKVLSSVQ-PEQESDWKLAFRIFGNFT 476
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 168 IHTHHLFQFIVVKMEASYQGGVSYDENGDNFQRLSQT-IASNIKKISQNVSSMSKMVNQL 344
+H + +V + EA GGV+ + + + ++ L + +A ++K + ++S+ +MV Q+
Sbjct: 35 LHRKGMGSLVVERSEALRVGGVALNVHANGWRALEELGLADGLRKTANLITSV-RMVRQI 93
Query: 345 Q 347
Q
Sbjct: 94 Q 94
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 8.5
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Frame = +3
Query: 243 ENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQNYTQKLAKD 422
EN + L++ + I+++ + V V QLQ E A R+ T++ K+
Sbjct: 1287 ENEVTKKTLTEAL-DQIEELVKEVECAKNSVYQLQDNIQRLEQNASAREADLLTERQEKE 1345
Query: 423 TSS------------LLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTK 566
T+S LL E+ K + T ERL +E T ++ T+R +TK
Sbjct: 1346 TTSKALAEAQAKIEGLLEEISSANKKTDLLQKTIERL-EEGATTTDALYLTERQEHDQTK 1404
Query: 567 EDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQM 686
+ ++AQ IN + + K++ ++ E R +E++
Sbjct: 1405 KAF--SEAQEINQQLYRKIEEAEKNIEQLRENVERLEERI 1442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,757
Number of Sequences: 37544
Number of extensions: 333901
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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