Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29m01
(715 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 25 0.54
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 25 0.54
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 25 0.71
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 2.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 6.6
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.6
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.6
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.6
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 8.8
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 21 8.8
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 8.8
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 25.4 bits (53), Expect = 0.54
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 180 HLFQFIVVKMEASYQGGVSYDENGD 254
+LF+FI ++ + G V++D+NGD
Sbjct: 330 NLFEFIRKQVLSGSTGKVAFDDNGD 354
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 25.4 bits (53), Expect = 0.54
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 LSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELR-AQL-RQIQNYTQKLAKDTSSLLM 440
++Q IA NI + N L ++ + + QL R ++Y + K+T + +
Sbjct: 413 INQNIAQNIDHAKNTIIDYRN--NDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNL 470
Query: 441 ELMRMPKDN 467
E+ PK N
Sbjct: 471 EISTRPKSN 479
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 25.0 bits (52), Expect = 0.71
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +3
Query: 219 YQGGVSYDENGDNFQRLSQTIASNIKKISQNVSSMSKMVNQLQTPQDSQELRAQLRQIQN 398
++ ++ G F + + I K + + MSK+ ++TP DS +R+ +QN
Sbjct: 497 FRDAITQTGTGPAFLTIKEWIERGTTKSMEAANIMSKLPKTVRTPTDSY-IRSFFELLQN 555
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 23.4 bits (48), Expect = 2.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 162 KTIHTHHLFQFIVVKMEASYQGGVSYDENGDNFQRLSQTIASNIKKISQNV 314
K I HL + V +E +Y+ G+ +++ +FQ I NIK+ + +
Sbjct: 635 KLISMRHLKEE-VSSIETNYECGLRFEDPMISFQPGDTIICINIKRQKEKI 684
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 134 LLPIHYRAMIENNQTQNMLL 75
L+P+H+ I N T N L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 134 LLPIHYRAMIENNQTQNMLL 75
L+P+H+ I N T N L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 134 LLPIHYRAMIENNQTQNMLL 75
L+P+H+ I N T N L+
Sbjct: 210 LIPVHFALRIYRNGTVNYLM 229
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 134 LLPIHYRAMIENNQTQNMLL 75
L+P+H+ I N T N L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 678 PAYGHLSRSSLPNLCY 631
P +G L+ + LPN CY
Sbjct: 85 PWHGVLNATVLPNSCY 100
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 293 NITGDSLRKSLKVISILIV*HTS 225
++T ++ +++LKVI L+ HTS
Sbjct: 102 DLTAEAKKQNLKVILDLVPNHTS 124
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 678 PAYGHLSRSSLPNLCY 631
P +G L+ + LPN CY
Sbjct: 85 PWHGVLNATVLPNSCY 100
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,025
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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