Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l18
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   1.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.3  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   2.3  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.2  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.2  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 511 KVKVRVYYEA-LCPDSKFFFVKNLAPVTEKLSEF 609
           KVK   +Y+A L    K    K  +PV +KLS+F
Sbjct: 162 KVKSAAFYQAKLAKQKKIASAKEASPVNQKLSQF 195


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 562 KILSQDIEPHSTLAPSLYPACACYIYHLRAPICRYLRSLKT 440
           KI  Q+ E     +    PAC   +   + PICRY   L++
Sbjct: 263 KIAGQETELADLFSLQKVPACIYCLREWKKPICRYCIDLRS 303


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 454 VDTDILELEDDKYNKHKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEKLSEFL 612
           ++ ++LE+ + K    K D ++ RVY E       F  +KN+A  +   S+ L
Sbjct: 338 IEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENFEDIKNIAQTSLLYSKAL 390


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 172 NCSYFFCHIFGMILNIITKC*SPENTNTKVVHT*INVFFILGL 44
           N   F  +I GM++NI+    S      KV +T  N+ + LG+
Sbjct: 458 NFRAFASYICGMLINIVGMAGSTGQKVPKVANTMFNLNYFLGI 500


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 466 ILELEDDKYNKHKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEKLSEFLDVTLVPY 633
           +L   D ++NKH     K+R+ + A+  D  F   ++   +  +L+ +    ++PY
Sbjct: 547 VLNSLDSRFNKHLAQADKIRLLFIAI-NDENFAVRESALRIIGRLNVYNPAYVMPY 601


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 469 LELEDDKYNKHKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEKLSEFLDVTLVPYG 636
           L L DD+++K +++   ++   E + PD K  F  +L     + ++ +D  LV YG
Sbjct: 298 LTLLDDRFDKVEEEYTPIKDERELIDPDQKDVF--DLVN-DNQFNDIMDEFLVSYG 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,033
Number of Sequences: 5004
Number of extensions: 51943
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)