Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l18
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    48   9e-06
03_02_0673 - 10328994-10329281                                         42   6e-04
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    36   0.021
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194...    29   4.2  
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544...    27   9.8  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 502 KQDKVKVRVYYEALCPDSKFFFVKNLAPV-TEKLSEFLDVTLVPYGKATTK 651
           K  KV V +YYE+LCP S  F V +LA V  + L + +D++LVPYG A  K
Sbjct: 28  KGGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNARVK 78


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 508 DKVKVRVYYEALCPDSKFFFVKNLAPVTEK-LSEFLDVTLVPYGKA 642
           +KV + +YYE LCP    F V +LA + E  + + +D+ LVPYG A
Sbjct: 37  EKVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 526 VYYEALCPDSKFFFVKNLAPV-TEKLSEFLDVTLVPYG 636
           VYYE LCP    F V +LA +  + LS  +D+ LVP+G
Sbjct: 3   VYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG 40


>02_03_0236 +
           16717320-16717496,16718082-16718240,16719410-16719472,
           16720041-16720205,16721140-16721217,16721318-16721428,
           16721516-16721632,16721713-16721808,16722592-16722662,
           16722780-16723011
          Length = 422

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 384 KHKHDYSVSIAVIECHFHSLKSFEHFIKLFLSRSDLSQ 271
           K KH   + ++ +E  FH L  +E   K+FL R +L Q
Sbjct: 216 KDKHAAYLEVSRLEIFFHQLSMYEE--KIFLKRYELEQ 251


>01_07_0246 +
           42253379-42253642,42253846-42254084,42254267-42254471,
           42254719-42254787,42254869-42255055,42255760-42255926,
           42256350-42257045
          Length = 608

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 466 ILELEDDKYNKHKQDKVKVRVYYEALCPDSKFFFVKNLAPV 588
           I++LEDD YN  +  + ++R YYE +    +F  V   APV
Sbjct: 413 IIQLEDDTYNP-QTPEAEIRKYYEPIGSWKRFSHVCT-APV 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,474
Number of Sequences: 37544
Number of extensions: 256433
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)