Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l18
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    38   0.006
Z37093-1|CAA85467.1|  264|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine rec...    28   5.0  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
           protein F37H8.5 protein.
          Length = 277

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 499 HKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEK-LSEFLDVTLVPYGKA 642
           H Q K+ + V  EALCPD + F  K L P+  K  + ++++ LVP+G A
Sbjct: 72  HNQ-KINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNA 119


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 496 KHKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEKLSEFLDVTLVPYGKA 642
           +H++  +K+ + YEALCP  + F    L  V  +    L + LVP+G +
Sbjct: 135 RHRRQPIKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNS 183


>Z37093-1|CAA85467.1|  264|Caenorhabditis elegans Hypothetical
           protein ZK669.2 protein.
          Length = 264

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 484 DKYNKHKQDKVKVRVYYEALCPDSKFFFVKNLAPVTEKL--SEFLDVTLVPYGKATTK 651
           D+ ++ K   + +  + E+LCPD+  +F  ++ PV   L  S  +++T  P+G A+ +
Sbjct: 64  DQASRAKTPPINIEFFGESLCPDTTRYFRNHIMPVWTSLQASSTINITYHPFGLASCR 121


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 544 IEPHSTLAPSLYPACACYIYHLRAPICRYLRSLKTELQVFLVLIEKTAT 398
           ++ H+ LAP+   A     YH R      +RSL T+++ +L   E +AT
Sbjct: 402 LKTHNKLAPTYETASTRMFYHGRT---ETVRSLTTDMEKYLTACENSAT 447


>U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 5 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 526 LAPSLYPACACYIY--HLRAPICRYLRSLKTELQVFLVLIEKT 404
           L PSLYP    Y+   ++   I  Y+R+ K+ +Q+FL +   T
Sbjct: 87  LCPSLYPLFEHYVLFPNIIFSIYNYMRAAKSIIQIFLTVNRMT 129


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 487 KYNKHKQ-DKVKVRVYYEALCPDSKFFFVKNLA 582
           +YN++ Q DK  +  YY  +CPD K  F + +A
Sbjct: 67  RYNQNDQADKDIMTRYYHGMCPDLKQKFEREVA 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,384
Number of Sequences: 27780
Number of extensions: 279732
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)