Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29l15
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical p... 28 7.1
Z69903-2|CAA93774.1| 364|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z54327-10|CAH04696.1| 596|Caenorhabditis elegans Hypothetical p... 27 9.4
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 9.4
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 9.4
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 9.4
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 27 9.4
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 27 9.4
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 9.4
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 9.4
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +2
Query: 239 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCA 418
+ EN P N F + + G K + D + +C +E++ + + + L A
Sbjct: 494 NIENMPSCNLKFSSFIRQEGDKTSDEDIYRIC----SEMRRTNGKVHKKMFNFELELTLA 549
Query: 419 YANKIAEHESFGDNITINAV-LVKEGRPKCVYRCMSNLQSRMDTFV 553
+NK E++S G N+T+N+ ++ E +Y+ N + FV
Sbjct: 550 GSNKSKEYQSHGSNLTLNSERVIHEAMEIPIYQASLNKSYKNVIFV 595
>Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical
protein C07A9.9 protein.
Length = 184
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 302 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 421
+Y VDD V C +C W D+C + H +L +C Y
Sbjct: 59 EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100
>Z69903-2|CAA93774.1| 364|Caenorhabditis elegans Hypothetical
protein F46F2.4 protein.
Length = 364
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Frame = +2
Query: 317 DDHVVCEYCEAEIKNWSEDE-CIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKE- 490
D + + +AE+ N+ + C SPY + N HE T A+L +E
Sbjct: 235 DKEIQLDIIKAELANYRQSTACSSRLQNDASPYAWWNN----HEG---GTTFLAILAREY 287
Query: 491 -GRPKCVYRCMSNLQSRMDTFVNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDC 658
P SR +N + + DM +A Y G+G VC +C
Sbjct: 288 LATPAVSIDANYFFSSRFQHILNTYFSRQLDMYLELAGGYQTYKGKGALKVCDISEC 344
>Z54327-10|CAH04696.1| 596|Caenorhabditis elegans Hypothetical
protein C26D10.7 protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 673 PITYATIAKETYSFVSATRVKKSRFRNVRNHV---TQCGRPKINKRIHTRL*IGHASVHT 503
P TYAT Y FV+ V+K + N+R+ + TQ +RI + G + H
Sbjct: 207 PTTYATFVYAVYDFVNGYWVEKEK-TNIRSQLDGETQDRHLDKKRRISLAVTAGGRASHQ 265
Query: 502 LGSAFFY 482
L + ++
Sbjct: 266 LETGMYF 272
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 428 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 458
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 432 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 462
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 427 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 457
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 334 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 364
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 385 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 415
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 467 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 497
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 573 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 481
N + N +++D KLD T+L LPSFT
Sbjct: 541 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,081
Number of Sequences: 27780
Number of extensions: 326280
Number of successful extensions: 1087
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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