Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l12
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   1.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.3  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.4  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   4.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   5.8  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   5.8  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   7.7  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +1

Query: 493 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRPNFLN 648
           +LK++L  IN   +K  + +   +++KSLTKN  E++    R  + R  +++
Sbjct: 638 ELKAQLNAINTLIKKAELVADQ-KQLKSLTKNHQEIEKAIHRKERQRDQYMS 688


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 307 NVNANTYRNKNNYFMETVYEQMVAIQMNNN 396
           N  ++TY    N  +ET YE   A Q+NNN
Sbjct: 361 NFPSDTYEGTEN-ILETAYESTTARQVNNN 389


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +1

Query: 505 KLEEINRHKQKITIDSQHFEKIKSLTKNVNE-------LQNMEKRVMKSRPNFLN 648
           + +++NR   +I I   H EK+K   KN N        LQ   K++ K R N LN
Sbjct: 443 RCDQLNR---EIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLLN 494


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
 Frame = +1

Query: 478  SQSQRDL----KSKLEEINRHKQKITIDSQHFE----KIKSLTKNVNELQNMEKRV 621
            S+  RDL    +S L +   +K+K+++ S   +    K+ SLTK VNEL     +V
Sbjct: 1195 SKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKV 1250


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 493  DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 627
            DL+SKL  ++   + + + S    K  SL    N+L+ +EK V K
Sbjct: 1043 DLQSKLSVVSSEYENLLLISSQTNK--SLEDKTNQLKYIEKNVQK 1085


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 499 KSKLEEINRHKQ---KITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 630
           ++KLEE +  K+    +  +++   K+  L   VNEL+ +EK + KS
Sbjct: 839 RTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKS 885


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +1

Query: 433 SSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 606
           + + F K F++N    ++ R ++  +     H+Q++    +  E+   L+  + +LQN
Sbjct: 103 TEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPLSPKLTDLQN 160


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 448 FKMFSKNYNASQSQRDLKSKLEEI-NRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVM 624
           F  F K Y+  + +RD    ++EI ++ K  I +   H+  ++SL      L  ++K   
Sbjct: 65  FLNFDKEYSVPEFERDASRVIDEIHSQGKIPIVVGGTHY-YLQSLLFEDTTLSAIDKLTN 123

Query: 625 KSRPN 639
            S P+
Sbjct: 124 DSSPS 128


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 490 RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 621
           R  K KLEEIN  K KI    +   +  S TKN+ +++   K++
Sbjct: 7   RSQKRKLEEINNQK-KIKTKKKATGQQTSNTKNLRDVKKKGKQL 49


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 556 HFEKIKSLTKNVNELQNMEKRVMKSRPNFLNYGINN 663
           H E+I SL   +  +  +E     +RP FL+Y  N+
Sbjct: 146 HLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNH 181


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 448 FKMFSKNYNASQSQRDLKSKLEEINRHKQ 534
           +KM S+N   SQSQ++ KS+L   N H++
Sbjct: 393 YKMKSRNLLYSQSQKESKSRL--FNGHEE 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,552
Number of Sequences: 5004
Number of extensions: 55008
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)