Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l12
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148...    31   1.1  
04_01_0308 + 4188726-4190351                                           29   3.4  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   3.4  
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027...    29   4.5  
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377...    28   6.0  
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64...    28   7.9  
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    28   7.9  

>04_04_1379 +
           33113374-33113529,33114046-33114143,33114811-33114880,
           33116668-33116800,33116981-33118940,33119016-33119076,
           33119554-33120057
          Length = 993

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRP 636
           Q Q D++S+  + N  K       QH E +K +TK   E Q +   V K  P
Sbjct: 288 QKQLDIRSEERKFNL-KSADAAHKQHLENVKKITKLEAECQRLRSMVRKRLP 338


>04_01_0308 + 4188726-4190351
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 460 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 627
           ++N   ++   DLK KLEEI  +K  +  ++   +     T+  N L   E + +K
Sbjct: 170 AQNEEITKKLEDLKRKLEEIQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLK 225


>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
            420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 424  CFTSSVYFFKMFSKNYNASQSQRDLKSKLEEI-NRH-KQKITIDSQHFEKIKSLTKNVNE 597
            C T      K+ S   + S  ++ L S+LE I   H +Q+  I+  HF   K   +   E
Sbjct: 914  CKTVEFLEAKLSSLQKDISSKEQSLLSELESIFQEHTEQEEKINRAHFMLNKIEKEKTLE 973

Query: 598  LQNMEKRVM 624
            ++N+E+ VM
Sbjct: 974  VENLEREVM 982


>02_05_0549 +
           29900714-29900953,29902224-29902323,29902578-29902719,
           29902720-29902826,29903179-29903480
          Length = 296

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 295 RHLKNVNANTYRNKNNYFMETVYEQMVAIQMNNN*LLIWIKRCCFTSSVYFFKMFSKNYN 474
           R    V  +    KN      V   +V+I +N+  +L+W K     + V  + M S+ + 
Sbjct: 118 RETSRVLVHCMSGKNRCDSSVVSIHVVSIVVNDRLILLWYKISRSAAIVIGYLMKSRGWR 177

Query: 475 ASQSQRDLKSKLEEI 519
            SQS + +K +  ++
Sbjct: 178 LSQSYQWVKDRRPQV 192


>04_01_0283 +
           3768732-3768792,3769235-3769876,3769907-3770076,
           3770134-3770511,3770602-3770991
          Length = 546

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 460 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSR 633
           ++N   ++   DLK+KLEEI  +K    ++S++ EK       +  L+ +   V++++
Sbjct: 204 TQNEEITKDLEDLKTKLEEIKTNKD--LVESENEEKYSQSEAEIKYLKQVMGAVVEAK 259


>12_01_0078 -
           639421-639624,639706-639876,640392-640597,640985-641100,
           641669-641855,642104-642338
          Length = 372

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 118 NMNVKTAYHKMILVKPC 168
           NMN+KTAY K+   +PC
Sbjct: 303 NMNLKTAYEKLTSKRPC 319


>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
            24273725-24273826,24273912-24274088,24274193-24274398,
            24274491-24274575,24274641-24274798,24274873-24274948,
            24275117-24275245,24275313-24275457,24275561-24275691,
            24276183-24276335,24276447-24276636,24277006-24277139,
            24277248-24277406,24277659-24277964,24278040-24278216,
            24278446-24278529,24278592-24278822,24278913-24279002,
            24279090-24279211,24279293-24279448,24279477-24279635,
            24279705-24279765,24280004-24280138,24280384-24280471,
            24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +1

Query: 484  SQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRPNFLN 648
            +++ L     +INRHK +IT      + +K LTK + E +  +++++  +   ++
Sbjct: 917  NRQQLDKTSSDINRHKVRITTCE---KLVKKLTKGIEESRKEKEKLLAEKEKMMS 968


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,909
Number of Sequences: 37544
Number of extensions: 301627
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)