Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29l12
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 30 8.8
U51587-1|AAB81549.1| 767|Homo sapiens Golgi complex autoantigen... 30 8.8
EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein. 30 8.8
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 30 8.8
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 30 8.8
BC032853-1|AAH32853.1| 767|Homo sapiens golgi autoantigen, golg... 30 8.8
BC001302-1|AAH01302.1| 495|Homo sapiens RAD18 homolog (S. cerev... 30 8.8
AY961989-1|AAX44049.1| 495|Homo sapiens RAD18 homolog (S. cerev... 30 8.8
AY004333-1|AAF86618.1| 495|Homo sapiens RAD18 protein. 30 8.8
AL451125-2|CAI14346.1| 767|Homo sapiens golgi autoantigen, golg... 30 8.8
AL354928-1|CAI39632.1| 767|Homo sapiens golgi autoantigen, golg... 30 8.8
AK222771-1|BAD96491.1| 495|Homo sapiens postreplication repair ... 30 8.8
AK023075-1|BAB14392.1| 495|Homo sapiens protein ( Homo sapiens ... 30 8.8
AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding... 30 8.8
AB208858-1|BAD92095.1| 400|Homo sapiens golgin 97 variant protein. 30 8.8
AB035274-1|BAA99284.1| 495|Homo sapiens postreplication repair ... 30 8.8
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 29.9 bits (64), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHFEK 567
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>U51587-1|AAB81549.1| 767|Homo sapiens Golgi complex autoantigen
golgin-97 protein.
Length = 767
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 472 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 618
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein.
Length = 877
Score = 29.9 bits (64), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHFEK 567
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 29.9 bits (64), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHFEK 567
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 29.9 bits (64), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHFEK 567
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>BC032853-1|AAH32853.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 472 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 618
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>BC001302-1|AAH01302.1| 495|Homo sapiens RAD18 homolog (S.
cerevisiae) protein.
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AY961989-1|AAX44049.1| 495|Homo sapiens RAD18 homolog (S.
cerevisiae) protein.
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AY004333-1|AAF86618.1| 495|Homo sapiens RAD18 protein.
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AL451125-2|CAI14346.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 472 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 618
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>AL354928-1|CAI39632.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 472 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 618
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>AK222771-1|BAD96491.1| 495|Homo sapiens postreplication repair
protein hRAD18p variant protein.
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 RDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AK023075-1|BAB14392.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ13013 fis, clone NT2RP3000590, weakly similar to
UVS-2 PROTEIN. ).
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding
protein protein.
Length = 484
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AB208858-1|BAD92095.1| 400|Homo sapiens golgin 97 variant protein.
Length = 400
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 472 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 618
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 117 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 163
>AB035274-1|BAA99284.1| 495|Homo sapiens postreplication repair
protein hRAD18p protein.
Length = 495
Score = 29.9 bits (64), Expect = 8.8
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +1
Query: 415 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 570
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 571 ------KSLTKNVNELQNMEKRVMKSRPNFLNYGINNF 666
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,058,887
Number of Sequences: 237096
Number of extensions: 1730474
Number of successful extensions: 3283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3277
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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