Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29l12
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 31 0.58
Z70284-14|CAA94285.4| 422|Caenorhabditis elegans Hypothetical p... 30 1.3
AF039042-9|AAC48245.1| 431|Caenorhabditis elegans Hypothetical ... 29 2.3
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 3.1
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 28 5.4
AL031634-1|CAA21034.1| 256|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82058-5|CAI46585.1| 309|Caenorhabditis elegans Hypothetical pr... 28 7.1
U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 28 7.1
U97189-9|AAC48161.1| 263|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/52 (25%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 481 QSQRDLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSR 633
++ RDL+ +LE+ + +QK+ +D + +++++L + + ELQ+ +++K +
Sbjct: 949 ETVRDLEEQLEQEEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEK 1000
>Z70284-14|CAA94285.4| 422|Caenorhabditis elegans Hypothetical
protein K07F5.14 protein.
Length = 422
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +1
Query: 463 KNYNASQSQRDLKSKLEEINRHKQKITIDSQHF------EKIKSLTKNVNELQNMEKRVM 624
K +QS+ + +++I + K+ + ++ F EKIKSL N Q +EK +
Sbjct: 314 KKIEPTQSKAEPSGNVDKIEKSLLKVKVSTKFFVDPLSDEKIKSLAANFRRTQTVEKVID 373
Query: 625 KSRPN 639
K P+
Sbjct: 374 KWAPH 378
>AF039042-9|AAC48245.1| 431|Caenorhabditis elegans Hypothetical
protein ZK697.2 protein.
Length = 431
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +1
Query: 277 ICPFNLRHLKNVNANTYR--NKNNYFM 351
+CPF+L +K ++ +TYR N+N+Y M
Sbjct: 201 VCPFDLSDMKPLSYDTYRYKNRNDYTM 227
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 454 MFSKN--YNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 627
+FS N N DLKS + + K+T+D++ + +K L EL+ M + K
Sbjct: 649 IFSMNEALNMKLDVNDLKSLCSTVQKEMSKVTLDAKDQQNLKRLATLSAELETMATSLNK 708
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 457 FSKNYNASQSQRDLK-SKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSR 633
+++N + Q L+ S++E N+ Q I H ++ + + N LQN RVM+
Sbjct: 118 YNQNMSEQSEQPILRPSRMESTNQSHQNID-SMYHIDQPQQVVFQAN-LQNRSNRVMQQT 175
Query: 634 PN 639
PN
Sbjct: 176 PN 177
>AL031634-1|CAA21034.1| 256|Caenorhabditis elegans Hypothetical
protein Y32B12C.1 protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 442 YFFKMFSKNYNASQSQ-RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNE 597
+ F + KN ++ + D K LEEI R ++ + + K+K+ K E
Sbjct: 77 FLFCYYKKNIEDTRGRLEDDKETLEEIQRTHDELNVKFEELNKVKTFIKKQKE 129
>Z82058-5|CAI46585.1| 309|Caenorhabditis elegans Hypothetical
protein T27C5.12 protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = -2
Query: 299 CRRLKGQMGCVADK------RFQFNSPSSPPFNLKMALHVSTLSCSC 177
C+ M CV DK + Q N + PF +M LH +T S +C
Sbjct: 156 CQSCGTNMTCVVDKIYTGLRKIQTNWNGTVPFTDRMILHTATYSWNC 202
>U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical
protein F33G12.5 protein.
Length = 928
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/52 (21%), Positives = 32/52 (61%)
Frame = +1
Query: 475 ASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 630
A + ++DL+SK E++ + K+ ++++ + + L +++ + +EKR ++
Sbjct: 664 AEEERKDLESKQEQLELKETKVPEEAENQQSSRELHEDLWARKELEKRFARA 715
>U97189-9|AAC48161.1| 263|Caenorhabditis elegans Hypothetical
protein C48B6.9 protein.
Length = 263
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = -2
Query: 590 TFFVRLLIFSKCWLSIVIFCLCLLISSNLD 501
T F+R++ FS + SI++F + L+++ ++D
Sbjct: 180 TSFLRIVAFSFWFASIIVFVIVLMLTVSID 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,655
Number of Sequences: 27780
Number of extensions: 310689
Number of successful extensions: 1043
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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