Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29l09
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 30 0.26
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.0
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 28 1.4
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 2.4
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 7.3
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 7.3
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.3
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 25 9.7
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 458 NGRLNMNLDTVQFSPDACECSSGYEKMLFRQTALART 568
N ++ + T QF+ D E +S + + +FRQ+ L RT
Sbjct: 391 NDEFDLTMRTPQFNYDGVENTSSFVERIFRQSGLQRT 427
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/85 (21%), Positives = 30/85 (35%)
Frame = -3
Query: 560 PAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSADHCCIDKASAFPYRPPSLCTCSRMLETR 381
P F ++ + H ++ I Y D I K S PY P + + +
Sbjct: 690 PESFSKLLYSHIEPMLKVSITPIGSFRRPYPLDTTLIVKPSGQPYAPSTSRERNNNISEL 749
Query: 380 QNLRLRRKCEASPVRDRILSSPEPV 306
N R + + + P S EP+
Sbjct: 750 SNSRTKHRAKDDPKGSFCFSVDEPM 774
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 455 CIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 321
C+ +P C + LET +RLR K +DRI+S
Sbjct: 508 CLRDRLIYPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 371 GDFVVSQACVSTYRDLVDDTGT--PRPYLCNNGRLNMNL 481
G F +++AC D + +TGT P PYL +G ++ L
Sbjct: 1969 GIFFITKACGILLLDSISNTGTIMPTPYLDIHGETDLQL 2007
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +2
Query: 269 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 430
DG + L+A P + D LG+ G V QACVS YR ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 443 PYLCNNGRLNMNLDTVQFSPDACECSSGYEKM--LFRQTALARTIPVCI 583
P+LCN+G+ + + F AC G + L+ + P CI
Sbjct: 41 PFLCNSGKKFLQISNASFFLPACFYLLGSSSIIQLYEPLLWLSSFPFCI 89
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -3
Query: 374 LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 195
L R K ++ L S P+R K + +KNHP + + L A P +T
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479
Query: 194 T 192
T
Sbjct: 480 T 480
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 608 YTNWPSDSECTRGSCEPAPFGEIA 537
Y N D C RG +P+ G+ A
Sbjct: 468 YVNKKRDERCARGEFDPSAIGDFA 491
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 173 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIE 328
++C ++ LP V D +C V S S+L G C T++++ A + + I+
Sbjct: 446 LECLVSVLPSVPDIRC----VHSVLTSQLNETTGRCEMTDSIIIASSNETIK 493
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,314
Number of Sequences: 5004
Number of extensions: 58294
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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