Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l07
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    50   5e-08
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    50   5e-08
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   1.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    23   5.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   5.4  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    23   5.4  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    22   9.5  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 49.6 bits (113), Expect = 5e-08
 Identities = 22/25 (88%), Positives = 22/25 (88%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRR EPKKFGG GARAR QKSYR
Sbjct: 116 ADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 49.6 bits (113), Expect = 5e-08
 Identities = 22/25 (88%), Positives = 22/25 (88%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRR EPKKFGG GARAR QKSYR
Sbjct: 116 ADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  DTRNLTVKPSRKPSGGIVAASCCH 129
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
 Frame = +1

Query: 118 SCCHCDIIG-WCT 153
           SCCHC+    WC+
Sbjct: 25  SCCHCETCRIWCS 37


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 81 LNGKISGIWHGHLDHRTSWARSDAGQ 4
          L GK+  +W+   +    W RS  GQ
Sbjct: 9  LLGKLKKLWNDTKNDYLEWERSQQGQ 34


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 131 Q*QHDAATIPPDGFLEGLTVRF 66
           Q  HDA +IP  G L G  V F
Sbjct: 108 QDSHDAESIPQFGLLTGKQVTF 129


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 119 DAATIPPDGFLEGLTVRFLVS 57
           DA++ PP+  L+ LTV+ L S
Sbjct: 17  DASSFPPNPILQVLTVKELNS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,371
Number of Sequences: 5004
Number of extensions: 8138
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)