Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l07
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           55   7e-09
11_01_0155 - 1287003-1287452                                           55   7e-09
01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518     27   2.7  
03_04_0086 + 17196676-17197656                                         25   6.3  
02_05_0156 + 26341904-26342801,26343469-26344148                       25   8.3  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149


>01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518
          Length = 429

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 61  TRNLTVKPSRKPSGGIVAASCCHCDIIGW 147
           TR   V  + +   G+ A + CH D  GW
Sbjct: 367 TRAYAVSMAGRDGTGVEAVAVCHADTAGW 395


>03_04_0086 + 17196676-17197656
          Length = 326

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 97  SGGIVAASCCHCDIIGWC 150
           +GG V  +C  C   GWC
Sbjct: 28  AGGAVCPNCLCCSQFGWC 45


>02_05_0156 + 26341904-26342801,26343469-26344148
          Length = 525

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 96  WFS*RLNGKISGIWHGH 46
           WF  R  G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,887,918
Number of Sequences: 37544
Number of extensions: 67635
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)