Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l07
         (156 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                  57   9e-09
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...    57   9e-09
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...    57   9e-09
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...    57   9e-09
M62302-2|AAA58501.1|  372|Homo sapiens growth/differentiation fa...    28   4.8  
AC003972-2|AAB94786.1|  372|Homo sapiens GDF-1 protein.                28   4.8  
S70458-1|AAB30799.1|   56|Homo sapiens cellular adhesion regulat...    27   8.4  
S54769-1|AAB25303.1|   82|Homo sapiens cellular adhesion regulat...    27   8.4  

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCE KKFGGPGARARYQKSYR
Sbjct: 122 ADPRRCESKKFGGPGARARYQKSYR 146


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCE KKFGGPGARARYQKSYR
Sbjct: 122 ADPRRCESKKFGGPGARARYQKSYR 146


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCE KKFGGPGARARYQKSYR
Sbjct: 122 ADPRRCESKKFGGPGARARYQKSYR 146


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRRCE KKFGGPGARARYQKSYR
Sbjct: 122 ADPRRCESKKFGGPGARARYQKSYR 146


>M62302-2|AAA58501.1|  372|Homo sapiens growth/differentiation
           factor 1 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   ADPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 110
           A PRR  EP   GGPG   R ++ Y  +F++ +GW+R
Sbjct: 249 ARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283


>AC003972-2|AAB94786.1|  372|Homo sapiens GDF-1 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   ADPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 110
           A PRR  EP   GGPG   R ++ Y  +F++ +GW+R
Sbjct: 249 ARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283


>S70458-1|AAB30799.1|   56|Homo sapiens cellular adhesion regulatory
           molecule protein.
          Length = 56

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 97  SGGIVAASCCHCDIIGWCTI 156
           SGG+  A CCH D   WC +
Sbjct: 12  SGGLTTAPCCHVD---WCKL 28


>S54769-1|AAB25303.1|   82|Homo sapiens cellular adhesion regulatory
           molecule protein.
          Length = 82

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 97  SGGIVAASCCHCDIIGWCTI 156
           SGG+  A CCH D   WC +
Sbjct: 38  SGGLTTAPCCHVD---WCKL 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,209,239
Number of Sequences: 237096
Number of extensions: 383944
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 76,859,062
effective HSP length: 31
effective length of database: 69,509,086
effective search space used: 1390181720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)