Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l07
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    52   4e-08
Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    25   7.3  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical...    25   7.3  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 23/25 (92%), Positives = 23/25 (92%)
 Frame = +3

Query: 3   ADPRRCEPKKFGGPGARARYQKSYR 77
           ADPRR E KKFGGPGARARYQKSYR
Sbjct: 120 ADPRRRESKKFGGPGARARYQKSYR 144


>Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 81  LNGKISGIWHGHLDHRTSWARSDAGQP 1
           +NG + G  H HL H T + +     P
Sbjct: 269 INGHVMGAHHHHLPHHTRFLQHQQSAP 295


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 133 RNDNTTPRRYHPMVFLKA*R*DFWYL 56
           R  N T RR HPM F+   +  + YL
Sbjct: 229 RVQNNTLRRIHPMAFMNVPQLQYLYL 254


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 6   DPRRCEPKKFGGPGARARY 62
           DPR+ E  K   PGARA++
Sbjct: 369 DPRKNERSKVNQPGARAKW 387


>AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 81  LNGKISGIWHGHLDHRTSWARSDAGQP 1
           +NG + G  H HL H T + +     P
Sbjct: 269 INGHVMGAHHHHLPHHTRFLQHQQSAP 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,793,704
Number of Sequences: 27780
Number of extensions: 49988
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)