Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l07
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   3.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    19   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   7.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 87  KKTIGWYRRGVVL 125
           K T+ W+R+G+ L
Sbjct: 21  KHTVHWFRKGLRL 33


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 160 WYLIGMPGKKNTITYQ 175


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +1

Query: 127 HCDIIG 144
           HCD+IG
Sbjct: 45  HCDVIG 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 79  KPSRKPSGGIVAASCCHC 132
           +PS+ P+ G    SC  C
Sbjct: 375 EPSKNPAMGHWQMSCVAC 392


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 228 WYLIGMPGKKNTITYQ 243


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  WYLARAPGPPNFLGSQ 17
           WYL   PG  N +  Q
Sbjct: 228 WYLIGMPGKKNTITYQ 243


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 15  RCEPKKFGG 41
           R EPK++GG
Sbjct: 91  RWEPKEYGG 99



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 148 TTQ*YRNDNTTPRRYH 101
           +TQ    ++ TP+R+H
Sbjct: 395 STQEDSEEHLTPKRFH 410


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 15  RCEPKKFGG 41
           R EPK++GG
Sbjct: 91  RWEPKEYGG 99



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 148 TTQ*YRNDNTTPRRYH 101
           +TQ    ++ TP+R+H
Sbjct: 395 STQEDSEEHLTPKRFH 410


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 96  IGWYRRGVVLSLRYHWV 146
           IG+   G+V     HW+
Sbjct: 161 IGFLLAGIVQPFLIHWI 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,609
Number of Sequences: 438
Number of extensions: 567
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)