Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29l06
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.64 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   4.5  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   7.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   7.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -2

Query: 695 IQFIGQTIYRIVYVVIHNNFYVFHELLFVKRVVFEEKIERFPFAAVGQIRFQHRI*IFRH 516
           I  IG+  Y  VY  I+    V  +L+ +KR+  E++ + FP   V +++   R+   RH
Sbjct: 280 IDQIGEGTYGKVYKAINT---VTGDLVALKRIRLEQEKDGFPITTVREVKILQRL---RH 333

Query: 515 -HVIASVHVSSKQNVVLFVVN*LD 447
            +++  + +  +++ V  V   +D
Sbjct: 334 KNIVRLLEIMVEKSSVYMVFEYMD 357


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 595 SKRKSSGFHLPLLARYVSSTEFKSSVTT*SLAYTSRANKT 476
           +K KS+ +H P     VSS   +S+ T    AY   A KT
Sbjct: 514 TKSKSAAYHYPATTETVSSKAARSATTP---AYVGGATKT 550


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 324 PNIMMNNNVLVHNFYDKLYAKHCKRMF 404
           P +    N+L   F+D L+ +HC  +F
Sbjct: 273 PTVQQFMNLLKKAFFDHLFGRHCLLLF 299


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 665 IVYVVIHNNFYVFHELLFVKRVVFEEKIERF 573
           IVY  + + F+V++ +L +++  FE+ I+ F
Sbjct: 297 IVYEGVPHCFWVYYPMLSLRKKYFEDAIDGF 327


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 604 VLYSKRKSSGFHLPLLARYVSSTEFKSSVTT*SLAYTS 491
           ++Y   K SGF LP + R V  +   ++ TT   +Y S
Sbjct: 482 IMYPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYS 519


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/76 (18%), Positives = 34/76 (44%)
 Frame = +3

Query: 174 LNEQLNCVMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNNVL 353
           L ++   + H+C    +      +  E   ID NN +    ++    +++ +  M+   L
Sbjct: 209 LQKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARNLINYESNQMDAVKL 268

Query: 354 VHNFYDKLYAKHCKRM 401
           + + + + Y  HCK++
Sbjct: 269 ISDTFVEPYQYHCKQL 284


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 388  CLAYNLS*KLCTKTLLF 338
            C  YN+S K+CTK + F
Sbjct: 1317 CAVYNISTKICTKYIQF 1333


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  DFNELYDKIENKYKLKYTFDC 104
           +FNE+++   ++Y LKY+  C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 42  DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 161
           D NE++D  E    L    D  T   +R++    Q  KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,760
Number of Sequences: 5004
Number of extensions: 57232
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)