Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29l06
(696 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 25 0.91
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 2.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 2.8
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.8
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.8
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.8
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 4.8
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.8
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.8
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 8.5
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 8.5
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 24.6 bits (51), Expect = 0.91
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 621 LVEHIKIIMNHDINYSIDSLANKLY 695
L EH+ + M D+ S+D+ K+Y
Sbjct: 241 LPEHVAVKMRQDLGASLDTQFKKIY 265
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
NNN +N+ + Y +CK+ LY N++ + I + + Y
Sbjct: 92 NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
NNN +N+ + Y +CK+ LY N++ + I + + Y
Sbjct: 92 NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
NNN +N+ + Y +CK+ LY N++ + I + + Y
Sbjct: 92 NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.0 bits (47), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHI 437
NNN +N+ + Y +CK+ LY N++ + I
Sbjct: 92 NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQI 122
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 339 NNNVLVHNFYDKLYAKHCKRMF 404
NNN +N Y+ Y +CK+++
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLY 355
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 587 SLRIQHASQTTTRGTHKNYYESRHK 661
SLR + S T H Y +SRH+
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHE 240
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = -1
Query: 603 CCIRRENRAVSICRCWPDTFPAQN 532
C + + R + CR W FP ++
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRS 412
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = -1
Query: 603 CCIRRENRAVSICRCWPDTFPAQN 532
C + + R + CR W FP ++
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRS 412
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,506
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -