Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k24
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.94 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 456 TTAANVPYSNYYMYKSVLSIV 518
           T +   PY +YY Y  VL++V
Sbjct: 630 TLSTKCPYPSYYSYIGVLTLV 650


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 518 NESYSTLLVTSINVIHH 568
           N+ Y+ L  T+INVI H
Sbjct: 85  NKEYNMLRTTAINVIRH 101


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 400 VNLMALSRGGNVALSLLISAYNSAMCFLYV 311
           + L  ++ GG     LL S   S  C L++
Sbjct: 429 IGLFCITEGGMYVFQLLDSYAVSGFCLLFL 458


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 400 VNLMALSRGGNVALSLLISAYNSAMCFLYV 311
           + L  ++ GG     LL S   S  C L++
Sbjct: 482 IGLFCITEGGMYVFQLLDSYAVSGFCLLFL 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,279
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)