Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k22
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    28   0.59 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   1.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   2.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   2.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   3.1  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   5.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.5  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    25   5.5  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    24   9.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   9.6  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 165 KFRHCLLQRFLRDKMSPRPL 106
           +FR+ LLQ FL  K SPRPL
Sbjct: 79  EFRNSLLQLFLAAKDSPRPL 98


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 41  SSPDVNPLDLKLW-SVLEDMACSKG-RGDILSLKN 139
           +SPDVNP  L  W +V + +  SK    D + LKN
Sbjct: 183 TSPDVNPFYLSEWPTVTDSILLSKSLSSDAIPLKN 217


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 257 ENYSKWSPCSFIQAFNLFGHESMDLRTVSKGNFATACSKDF 135
           EN  + SP    QA   FG  S+DL + + G     CS DF
Sbjct: 4   ENVERLSP---EQADAFFGQSSVDLISRALGGQVLGCSDDF 41


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 192 YGFTYCFQGKFRHCLLQRFLRDKM 121
           YG+++CFQ   + CL     RD++
Sbjct: 119 YGYSFCFQKFLKICLFSPKNRDRL 142


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 289 PTYLLVSAKKKKTIRNGHLVLLYRPLICLATN 194
           PT+L   A K+KT+    ++ LYRP+I    N
Sbjct: 495 PTFL--EALKEKTMAENLVIALYRPVILDTVN 524


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 308 NIIKINTNIFISLSKKKENYSKWSPCSFIQAFNLFGHESMDLRTVSKGNFATA 150
           N  +I+ +IF + S+K        PC  I+ F L G     +  +SK +F ++
Sbjct: 207 NSWRISGDIFDTFSRKDVR----CPCETIECFALQGDHCSVMNIISKASFLSS 255


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 87  KTDHNFKSKGLTSG 46
           KT+ +FKS GLTSG
Sbjct: 573 KTNSSFKSSGLTSG 586


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 148 QAVAKFPLETVRKSIDSWPNRLKACIKEQGDHFE 249
           Q++ +   ET  +S +SW NRL+  +    D+ E
Sbjct: 10  QSIIQRTGETTAESTNSWYNRLRTSMPWSNDYTE 43


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 77  WSVLEDMACSKGRGDILSLKNLWSKQWR 160
           W+ L   ACS+ R   +S +  W+K+ R
Sbjct: 101 WNNLRHQACSEIRASSMSGECRWTKELR 128


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 292 IPTYLLVSAKKKKTIRNGHLVLLYRPLICLATNLWIYVLFPREI 161
           IP  L  S+  K   +N H++LLY   +     L  Y   P+ +
Sbjct: 343 IPILLSDSSSYKIVSKNNHILLLYLNALDAPKQLLCYEADPKNL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,103
Number of Sequences: 5004
Number of extensions: 25570
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)