Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k22
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    29   0.97 
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915...    29   0.97 
09_05_0002 - 20013435-20013655,20013740-20013914                       28   2.2  
06_03_1336 - 29424470-29424897,29425243-29429653                       27   3.9  
12_01_0277 + 2013641-2013886                                           27   5.2  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    27   6.9  
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    26   9.1  
01_01_0107 - 792088-792420,792939-792984,793077-793090                 26   9.1  

>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = -1

Query: 305 IIKINTNIFISLSKKKENYSKWSPCSFIQAFNLFGHESMDLRTVSKGNFATACSKDF*ET 126
           ++K+   IF S+ + K+  +     S+IQ F   GH+ + LR + +       +     T
Sbjct: 114 LLKVRRYIFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCT 173

Query: 125 KCHRVL*SRPCPLKLTIILSLK 60
            CH  L + P    LT  LS K
Sbjct: 174 SCHCWLHNAP---SLTCSLSCK 192


>08_02_0751 +
           20789843-20789908,20791152-20791313,20791516-20791566,
           20792096-20792160,20792385-20792459,20792603-20792780,
           20793171-20793353,20793436-20793549,20793627-20793736,
           20793826-20793904,20794035-20794172
          Length = 406

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 35  PSSSPDVNPLDLKLWSVLEDMACSKGRGDILSLKNLWSKQWRNFPWKQYVNP 190
           PSS P+ NPLDL    VL + + + G G++  L+N  + Q+R        NP
Sbjct: 246 PSSGPNANPLDL-FPQVLPNASANAGGGNLDVLRN--NSQFRGLLSLVQANP 294


>09_05_0002 - 20013435-20013655,20013740-20013914
          Length = 131

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 147 LQRFLRDKMSPRPLEQAMSSKTDHNFKSKGLTSGL-DEGQTSALIKSGTL 1
           ++ F R K    P + + SSK      + G + G  D  QTSALI  G L
Sbjct: 6   MKDFYRQKKKGGPTKASSSSKKKTQHYTGGASVGASDTAQTSALISHGNL 55


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 68   LKLWSVLEDMACSKGRGDILSLK 136
            LKLWS+++ + CS    D LS K
Sbjct: 1562 LKLWSLIQSVDCSSAEPDSLSWK 1584


>12_01_0277 + 2013641-2013886
          Length = 81

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 126 KMSPRPLEQAMSSKTDHNFKSKGLTSG 46
           +MSP PLE+A  SKT      + LTSG
Sbjct: 16  QMSPPPLERAPPSKTTCGLLLRVLTSG 42


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +2

Query: 23  AEVWPSSSPDVNPLDLKLWSVLEDMACSKGRGDILSLKNLWSKQWRNFP-----WKQYVN 187
           A +W  ++   N LD   W+ L D        +IL L+ ++      FP     WK+Y +
Sbjct: 124 ARLW--NAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYAD 181


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 147 LQRFLRDKMSPRPLEQAMSSKTDHNFKSKGLTSGLDEGQTSALIK 13
           ++ F + K+  RP+ QA  S++ H+ +       +++ QTS+L K
Sbjct: 843 IKYFAKGKLVKRPVVQAGQSQSAHHREDIKAAEIIEKSQTSSLEK 887


>01_01_0107 - 792088-792420,792939-792984,793077-793090
          Length = 130

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 68  LKLWSVLEDMACSKGRGDILSLK 136
           LKLWS+L++  C+    D++  K
Sbjct: 71  LKLWSLLQNAGCNPSEQDVICWK 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,109,117
Number of Sequences: 37544
Number of extensions: 154047
Number of successful extensions: 413
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)