Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29k22
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 65 1e-11
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 34 0.040
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 34 0.040
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 34 0.040
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 34 0.040
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.21
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.21
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 31 0.21
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 31 0.21
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 31 0.21
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.21
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.21
AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical... 28 2.6
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 27 4.6
U28941-9|AAC71106.1| 452|Caenorhabditis elegans Hypothetical pr... 27 6.1
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 26 8.1
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 26 8.1
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 65.3 bits (152), Expect = 1e-11
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = +2
Query: 2 NVPDFIRAEVWPSSSPDVNPLDLKLWSVLEDMACSKGRGDILSLKNLWSKQW 157
N PDFI WP SSPD+NP+D +WSVLE ACSK +I SLK+ K W
Sbjct: 327 NFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAW 378
Score = 31.1 bits (67), Expect = 0.28
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 178 VRKSIDSWPNRLKACIKEQGDHFE*FSF 261
+R ++D++P R++ CI+ GD FE F
Sbjct: 425 LRATVDAFPKRVRVCIEADGDIFELMEF 452
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 33.9 bits (74), Expect = 0.040
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLEDM--ACSKGRGDILSLKNLWSKQWRNFPWKQ 178
WP+ SPD+NP++ LW +L + A +K + SLK W++ P Q
Sbjct: 67 WPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQ 116
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 33.9 bits (74), Expect = 0.040
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLEDM--ACSKGRGDILSLKNLWSKQWRNFPWKQ 178
WP+ SPD+NP++ LW +L + A +K + SLK W++ P Q
Sbjct: 255 WPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQ 304
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 33.9 bits (74), Expect = 0.040
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLEDM--ACSKGRGDILSLKNLWSKQWRNFPWKQ 178
WP+ SPD+NP++ LW +L + A +K + SLK W++ P Q
Sbjct: 255 WPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQ 304
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 33.9 bits (74), Expect = 0.040
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLEDM--ACSKGRGDILSLKNLWSKQWRNFPWKQ 178
WP+ SPD+NP++ LW +L + A +K + SLK W++ P Q
Sbjct: 385 WPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQ 434
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 201 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 241
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 237 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 242 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 282
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 278 LENAWKAIPMSVIHKLIDSMPRRCQAFIDANG 309
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 271 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 311
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 307 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 271 WPSQSPDLNPIE-HLWEKLERRLGGIRASNADAKFNQLENAW 311
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 307 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 201 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 241
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 237 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 201 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 241
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 237 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 32 WPSSSPDVNPLDLKLWSVLE----DMACSKGRGDILSLKNLW 145
WPS SPD+NP++ LW LE + S L+N W
Sbjct: 271 WPSQSPDLNPIE-HLWEELERRLGGIRASNADAKFNQLENAW 311
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 142 LEQAVAKFPLETVRKSIDSWPNRLKACIKEQG 237
LE A P+ + K IDS P R +A I G
Sbjct: 307 LENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12a protein.
Length = 480
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 283 YLLVSAKKKKTIRNGHLVLLYRPLICLATNLWIYVLF 173
+L V + T+ N HL+LL +I ++ L I+VLF
Sbjct: 71 FLCVPSLLAMTVLNEHLILLSTIMIIISAVLLIFVLF 107
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 304 LLKLIPTYLLVSAKKKKTIRNGHLVLLYRPLICLATNLWIYVLFP 170
L+ ++ L++S K K NG L+ P IC+ ++ + +FP
Sbjct: 133 LVSIMRLILIISPKNHKKF-NGQLLRFSIPFICVYPIIFTFFMFP 176
>U28941-9|AAC71106.1| 452|Caenorhabditis elegans Hypothetical
protein F31D5.1 protein.
Length = 452
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 264 KKRKLFEMVTLFFYTGL-*SVWPRIYGFTYCF 172
K +++ + FFYTGL S W IY F F
Sbjct: 222 KTQRMISLAVFFFYTGLVRSFWISIYPFCIKF 253
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 275 SLSKKKENYSKWSPCSFIQAFNLFGHESMDLRTVSKGNFATA-CSKDF 135
++ KK S+W P F + D + GN ATA C+K+F
Sbjct: 148 TIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEF 195
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 67 LKIMVSFRGHGLL*RTR*HFV--S*KSLEQA--VAKFP-LETVRKSIDSWPNRLKAC 222
LKI S+ G++ R + + S K+LEQ +AK L+T++ D W +R K C
Sbjct: 627 LKIAQSYEAAGIVKRCEEYVIKYSKKTLEQKEKLAKHHNLKTLKAHCDYWKSRRKCC 683
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,728
Number of Sequences: 27780
Number of extensions: 135988
Number of successful extensions: 400
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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