Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k22
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   3.7  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
 Frame = +3

Query: 126 CLLKIFGA-------SSGEISLGNST*IHRFVAKQIKGLY 224
           CLL IF         +SG++SLG  T     +  Q +G++
Sbjct: 69  CLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAEGIF 108


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 122 ILSLKNLWSKQWRNFPW 172
           +L L N  S  W+ +PW
Sbjct: 91  VLGLPNELSLFWQQYPW 107


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
 Frame = +3

Query: 126 CLLKIFGA-------SSGEISLGNST*IHRFVAKQIKGLY 224
           CLL IF         +SG++SLG  T     +  Q +G++
Sbjct: 37  CLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAEGIF 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,820
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)