Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k19
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421...    30   1.5  
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           29   4.5  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    29   4.5  
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622...    28   6.0  
06_01_0603 - 4350124-4350590,4350995-4353608                           28   6.0  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   6.0  

>09_04_0142 +
           15039745-15040538,15041094-15041218,15041842-15042137,
           15042267-15042554,15042834-15043193
          Length = 620

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 226 GDEERSRENRVTRRPLGQKLLQKNPKNRMFTTQS 327
           G++ER RE+ + RR  G++  Q+ P+ RM+  +S
Sbjct: 223 GEDERGREDVMVRRLAGRERWQRCPQCRMYVEKS 256


>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  VPVPFTSRPYKNPSRMQRPLIVNHIHQK*RP 102
           +P+   SRPYK P R   PL+ + + +K  P
Sbjct: 105 LPIKPGSRPYKQPPRHFNPLLYDRVKEKIDP 135


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 136 HDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKN 297
           H + P R Q+     K+  ++++ V KE EG+  R       R+P   K+++ N
Sbjct: 369 HSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNCRQP-NPKIVEDN 421


>09_06_0327 +
           22359524-22359602,22359732-22359835,22362073-22362272,
           22362359-22362459,22362551-22363005,22363079-22363645
          Length = 501

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 156 AERPIIVALGLAVALHIGWPSFLV 85
           AER  +  LGLA A H GWP+  V
Sbjct: 213 AERKAMKDLGLARARHFGWPNTYV 236


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -1

Query: 544 KASWAISGANLRCPIPSGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVYGT*GFKTALEK 365
           +AS ++  AN  C   SG     PRG   L   S   +R NP L   V G      A  +
Sbjct: 546 QASTSLRDANFSCNNFSG---AVPRGAGVLANLSAAAFRGNPGLCGYVPGIAACGAATAR 602

Query: 364 NARHR 350
             RHR
Sbjct: 603 RTRHR 607


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = +1

Query: 148 PLRVQKIRKIVKSAQIIVKVVSKEAEGDE-----ERSRENRVTRRPLGQKLLQKNPKN-- 306
           PL V++     +S  ++  +VS+E   +E       + + R  ++P GQ +  K  K   
Sbjct: 675 PLEVRRALSKKRSNSLLNHLVSEECSDEEFVHDFPDAEQARDCQKPSGQNIGSKRKKGHR 734

Query: 307 -------RMFTTQSGVRLPISIDDVHF 366
                  +++T   GVRLP+S+++  F
Sbjct: 735 RGPTLCVKVWTLPEGVRLPVSLNNSGF 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,141
Number of Sequences: 37544
Number of extensions: 408659
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)