Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k19
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         26   0.96 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   1.3  
AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.        23   6.7  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -3

Query: 623 CCAPFKLIPIS 591
           CCAP KLIPIS
Sbjct: 401 CCAPTKLIPIS 411


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 404 LRPEFRIFPVQIDRAAP*KVETAWTRGPPSTRNWTTQVSSRDSPRS 541
           +RPEF IF  Q+D     +V T  T    ST   TT  S+  S  S
Sbjct: 453 IRPEFVIFDPQVD-----EVSTYCTYSSDSTTTTTTTKSASTSSHS 493


>AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 623 CCAPFKLIPIS 591
           CCAP KL PIS
Sbjct: 405 CCAPTKLNPIS 415


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,809
Number of Sequences: 2352
Number of extensions: 14861
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)