Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k19
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   4.1  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   7.1  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.1  
AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical...    27   9.4  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical
           protein Y48E1C.2 protein.
          Length = 369

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 435 KLTELHPKKWKPRGHVVPLPLGIGQRRLAPEIAQEAFS 548
           +LTEL+P +  PR +V  L  G G  RLA ++ ++ F+
Sbjct: 141 QLTELYPPETHPRHNVRILVPGCGLGRLAYDLMEQGFT 178


>U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical
           protein M02D8.2 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 160 QKIRKIVKSAQIIVKVVSKEAEGDEERSRENRV 258
           +K+RK +K  +  +++  K+ + +E+  R NRV
Sbjct: 91  KKLRKTIKKRECKIRIFKKKRDDNEDEHRRNRV 123


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 232 EERSRENRVTRRPLGQKLLQKNP-KNRMFTTQSGVRLPI 345
           EER  +NRV  + L +KL +K P K +  T Q+ V   I
Sbjct: 385 EERINQNRVLAKKLREKLEKKRPIKKKSLTHQNSVTAEI 423


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/88 (20%), Positives = 45/88 (51%)
 Frame = +1

Query: 88  QK*RPANMQRNREPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRR 267
           +K +P  +    +PK    +   ++K +++  S QII +   K  E  EE+ ++ + + +
Sbjct: 398 KKPKPEGVVTVPKPKGRPPKKATLEKRKRL--SEQIIAQQQKKLDEFKEEKEKQEKTSDK 455

Query: 268 PLGQKLLQKNPKNRMFTTQSGVRLPISI 351
              ++ L +  ++++   +S + LP S+
Sbjct: 456 KPKKQTLAEEIRDQLLRAKSKIVLPNSV 483


>U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical
           protein ZK742.2 protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +1

Query: 154 RVQKIRKIVKSAQIIVKVVSKEAEG--DEERSRENRVTRRPLGQKLLQKNPKN-RMFTTQ 324
           RVQ +RK+VK  Q++ +   K A+   D     +N V +    + +  + PKN R  +  
Sbjct: 290 RVQTLRKLVKRLQLLKQPGEKLAQEIIDYRDGIKNLVLKADELRIINPRPPKNKRKKSDD 349

Query: 325 SGVRLPISIDDVHFFLVQF 381
             + + ISIDD+   +VQ+
Sbjct: 350 DFIDVDISIDDI--LMVQY 366


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 277  QKLLQKNPKNRMFTTQSGVRLPISIDDVHFFL----VQF*SPKCHTPSTRVSDFSGTN*Q 444
            + +++    ++  TTQ  + +P+S+     F     +QF +P  +     +    G   +
Sbjct: 3367 KSIVESEQLHKELTTQKDIYVPLSLFTSSLFFSFSNLQFHNPMYNYSVNTIMHLFGKTIK 3426

Query: 445  SCTLKSGNRVDT 480
            SC  KS  RV+T
Sbjct: 3427 SCEDKSSTRVET 3438


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +3

Query: 432 YKLTELHPKKWKPRGHVVPLPLGIGQRRLAPEIAQEAFSQRPFRSQKYLIPGPRYRN*FK 611
           Y+L E H   W P GH  P+P+   Q R    +   A    P        PGP ++N   
Sbjct: 436 YRLPENHQDYWPPGGH--PIPMQQQQMRQGAGLPNMAMPPPPLMRH----PGP-HQNPIH 488

Query: 612 RCATTQLSARISRD 653
              + Q+   +S D
Sbjct: 489 AMQSMQVQPPLSPD 502


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +3

Query: 432 YKLTELHPKKWKPRGHVVPLPLGIGQRRLAPEIAQEAFSQRPFRSQKYLIPGPRYRN*FK 611
           Y+L E H   W P GH  P+P+   Q R    +   A    P        PGP ++N   
Sbjct: 436 YRLPENHQDYWPPGGH--PIPMQQQQMRQGAGLPNMAMPPPPLMRH----PGP-HQNPIH 488

Query: 612 RCATTQLSARISRD 653
              + Q+   +S D
Sbjct: 489 AMQSMQVQPPLSPD 502


>AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical
           protein Y37H2A.14 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 124 EPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAE--GDEERSRENRVTRRPLGQKLLQK 294
           +PK HD  P ++  ++K  KS +   K + + A    DE    E++V +    QK L+K
Sbjct: 76  DPKAHDESPKQMPLVKKSKKSQKKTNKEIVEVAPEVRDEAPQLESQVKKPKKTQKKLKK 134


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 53  VCNGL*S*TTFTKNEGQPICSATASPSATIIGRSA 157
           V N L S +T+  +  +PI S+TA+P ++  G++A
Sbjct: 805 VTNQLASSSTYGASSTEPIASSTANPGSSTSGQTA 839


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,739
Number of Sequences: 27780
Number of extensions: 350809
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)