Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k13
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   181   8e-47
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.9  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   8.5  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             25   8.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  181 bits (441), Expect = 8e-47
 Identities = 98/222 (44%), Positives = 127/222 (57%), Gaps = 1/222 (0%)
 Frame = +2

Query: 68  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 244
           M   D+ +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 245 ASYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 424
           A+Y  A        T P                     +DLFGS                
Sbjct: 61  ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112

Query: 425 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 604
            + Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171

Query: 605 GINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFKQ 730
           G+NK QI  V+EDDKVS++ L E+++ FED+VQS DIAA  +
Sbjct: 172 GVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSK 213


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 289 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 179
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 101  LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 259
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 586 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 479
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 44  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 142
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 608 INKLQIMCVIEDDKVSVDLLTEKIQEF 688
           INK Q+M   E ++ ++DLL++   EF
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF 177


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 PPVLNPRLPPQQRKTTMTT 356
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,997
Number of Sequences: 5004
Number of extensions: 54533
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)