Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29k01
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 29 0.64
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 28 1.1
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 1.1
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 28 1.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.6
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 2.6
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 4.5
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 5.9
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 7.8
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.8
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 206 TSIPISFNFFSTPVSIGILLP*TSQCFLNIKSIC 105
TS+P+S+NF P+ + LP +N+K C
Sbjct: 156 TSLPMSYNFLQNPLVGRVRLPNGKTTIVNLKGQC 189
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 28.3 bits (60), Expect = 1.1
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Frame = +1
Query: 46 FLENYRK*SKMRLTQALKRQHIDFMFKKHWLVQGKRIPIDTGVEKKLKDMGIEVQDAL-E 222
++E Y+K SK + KR F +HWL + G+ KL +EV +
Sbjct: 11 WVEKYKKESKKSWDKFYKRNETRFFKDRHWL--DREFDCYFGLPDKLPLTILEVGCGVGN 68
Query: 223 FVKGKREEREHIQIIGPYEQPLPLD--KNHPNYKEK---PCLTLNQDNVLLEGLSQAQVL 387
V E + +++I P +D K H Y E P + ++ LLE L A +
Sbjct: 69 LVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSACID 128
Query: 388 TKTIIAQDKLPPKIEELSRLPAPAAI 465
T T I P+ ++L + A++
Sbjct: 129 TLTAIFVLSAIPREKQLRSIKNLASV 154
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 261 LYVFAFFPFSFYEFKSILNLNTHILQFFFNARV 163
+Y+ F + YEFK I L T +++F ++
Sbjct: 3 VYLSEFINWKLYEFKKINELGTSTFRYYFKGKI 35
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 271 PYEQPLPLDKNHPNYKEKPCLTLNQ 345
P P L+ N P Y EKP LTL Q
Sbjct: 244 PSISPHSLNPNFPQYTEKPALTLLQ 268
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 497 LMSLIVSRKNYRKSKTHSDQLIIFVEYWASLIADESEYKK 616
L L VS + SD++I + YW SL+ + Y+K
Sbjct: 1397 LFLLEVSDLKQTECNAQSDKIIKSITYWQSLLFNSKTYQK 1436
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 319 EKPCLTLNQDNVLLEGLSQAQVLTKTIIAQDKLPPKIEELSRLPAPAAIHENV 477
E+P + DN LEG+S+ L +T + + I S +P+P IH+N+
Sbjct: 105 EEPIVPEEPDN--LEGVSEETPLKETSLELSE-EEIITSKSPIPSPETIHKNI 154
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 301 NHPNYKEKPC-LTLNQDNV---LLEGLSQAQVLTKTIIAQDKLPPKIEELSRLP 450
+H + PC ++++ + +LEGL+Q ++ +D + KI +SRLP
Sbjct: 231 SHDTFLSLPCHISMHTSYMTQGILEGLTQKISKHSDVLNRDAMYSKISRISRLP 284
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 223 FVKGKREEREHIQIIGPYEQPLPLDKN 303
F K ++E + +++ G QP+ L+KN
Sbjct: 327 FKKNDQKELDRVEVYGALSQPVQLNKN 353
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 227 TNSRAS*TSIPISFNFFSTPVS 162
TN+ T IP SFNF++T S
Sbjct: 205 TNTAHDATDIPSSFNFYNTQAS 226
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 393 NYNSSRQTSSKNRRTITTTSSGCYSRKRKK 482
N + ++ SK++R + TSSGC + K
Sbjct: 473 NQSPDTRSVSKSKRLVRETSSGCLFKNHSK 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,715
Number of Sequences: 5004
Number of extensions: 62630
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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