Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k01
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    29   2.7  
04_01_0072 - 784922-785567,785673-786406                               29   2.7  
09_02_0481 - 9772783-9773985                                           29   3.5  
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     28   6.2  
01_01_0607 + 4508225-4508282,4508391-4508452,4508534-4508614,450...    28   8.1  

>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +1

Query: 316 KEKPCLTLNQDNVLLEGLSQAQVLTKTIIAQDKLPPKIEELSRLPAPAAIHENVKKSILT 495
           K +P + L+Q+ +L EGL     +++  I Q+ L  K      + A   ++E  K+    
Sbjct: 555 KFRPSIALSQEELLSEGLWDFDRMSRPYILQETLEEKFGSFWTVIAANFLNEYKKQHYEF 614

Query: 496 ANVFDCEQKKLPKIKD 543
               + E+K + K+K+
Sbjct: 615 KEDCNTEKKIIAKLKN 630


>04_01_0072 - 784922-785567,785673-786406
          Length = 459

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 325 PCLTLNQDNVLLEGLSQAQVLTKTIIAQDKLPPKIEELSRLPAPAAIH 468
           P L+ + +  ++  + ++ V    + + DKL P IEEL   P+P  +H
Sbjct: 135 PTLSPHFEVFMIPEIRRSNVWYNMLNSDDKLDPAIEELEWPPSPCILH 182


>09_02_0481 - 9772783-9773985
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 82  LTQALKRQHIDFMFKKHWLVQGKRIPIDTGVEKKLKDMGIEVQD 213
           +   L+R  ++F+    W V+ K I +  G E+++KD G+ V++
Sbjct: 216 VADGLERADVNFI----WAVRPKNIDLGLGFEERIKDRGLVVRE 255


>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 503 SLIVSRKNYRKSKTHSDQLIIFVEYWASLIADESEYKKTVCFMYNL 640
           +L+ +  N  + K H+ Q++IF+E   S   D  E +KT+    NL
Sbjct: 189 TLLHAFNNDLEKKVHNYQVVIFIEVSNSETLDTLEMQKTISERLNL 234


>01_01_0607 +
           4508225-4508282,4508391-4508452,4508534-4508614,
           4508930-4508993,4509750-4509817,4510277-4510378,
           4510525-4510614,4510759-4510833,4510935-4510967,
           4511544-4511618,4511784-4511843,4512006-4512098
          Length = 286

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 70  SKMRLTQALKRQHIDFMFKKHWLVQGKRIPIDTGVEKKLKDMGIEVQDALEFVKG 234
           +K  LTQ +  QH+D    +   + G+     TG   KL+D+G E+Q   +   G
Sbjct: 147 AKRHLTQRI--QHLDDKLDQQKQISGQIKEEVTGARLKLQDIGSEMQKIKQVAHG 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,162
Number of Sequences: 37544
Number of extensions: 337053
Number of successful extensions: 763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)