Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29k01
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.39 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 399 NSSRQTS-SKNRRTITTTSSGCYSRKRKK 482
           NS+++T+  K R+T TTT     SRK +K
Sbjct: 784 NSTKETTPKKERKTATTTQPVISSRKEQK 812


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 286 LPLDKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 399
           LP+++N P Y    C      + L   L+Q +   K I
Sbjct: 152 LPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVI 189


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 270 SYNLYVFAFFPFSFYEFKSILNL 202
           +YN+ +    PFS Y F   LNL
Sbjct: 465 AYNVELHNSSPFSIYSFLERLNL 487


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 270 SYNLYVFAFFPFSFYEFKSILNL 202
           +YN+ +    PFS Y F   LNL
Sbjct: 503 AYNVELHNSSPFSIYSFLERLNL 525


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 548 CGSLIFGNFFCSQSKTLAV 492
           CG  +   FFC  S +L++
Sbjct: 49  CGPNVINPFFCDMSPSLSL 67


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 82  VSFWIIFYNFQESSKY 35
           + +W+I+  +QE  K+
Sbjct: 485 ICYWVIYVTYQEEFKW 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,593
Number of Sequences: 438
Number of extensions: 4460
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)