Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j19
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.73 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.73 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    28   0.97 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   3.9  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   3.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   9.0  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.0  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   9.0  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  SAASAIPSLVDAFSSSKPPQTDTPP 114
           S  S+ PSL  +  +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 271 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 441
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 442 DVTVEGGNVLATPSSS 489
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 224 LLNV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPPS*KAT 346
           +L V S +++A TS LP+      V+L    Q SPPS K T
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRT 171


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 25/111 (22%), Positives = 40/111 (36%)
 Frame = +1

Query: 271 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 450
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 451 VEGGNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTKPPQT 603
                V +TP ++       ++ + +T      Y    I S  P T  P T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 587



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
 Frame = +1

Query: 283 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 456
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 457 GGNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTKPPQT 603
              V +TP ++       ++ + +T      Y    I S  P T  P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 528


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 4   DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 105
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 253  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 366
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 334 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 423
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 94  GVWKKRKHRPRREWPKRQKRLKAQF 20
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 115 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 20
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 115 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 20
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 165



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 115 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 20
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 145 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 176


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 46  ASAIPSLVDAFSSSKPPQTDTPPARSMD 129
           A+  P++V  F +   PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 34  VVSAASAIPSLVDAFSSSKPPQTDTPPARS 123
           V  ++S +P     F SSKP   + PPA S
Sbjct: 312 VSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 503 PIVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 369
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 222 VSSTFDHPFSTPVLRSYRHRNQIEQ 296
           V  TFD P S P+L S +    +EQ
Sbjct: 200 VQQTFDIPMSKPILVSSKTGKNVEQ 224


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +1

Query: 475 TPSSSRITIGGLALMHQATLPCDL-----GYINPIIKSPIPYTKPPQT*HPFPSI 624
           TPS+S  TI      +   LP  +     G I+ I  +P P   PP    P PSI
Sbjct: 195 TPSAS--TINDQPFSNSFDLPSQVIADGTGAISDINGNPFPMNSPPLDMEPLPSI 247


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 230 NV*SSLFNACTSILPAPKPNRTVSLC----NHYQTSPP 331
           +V SSL    T +LP    +R + LC    NH+  S P
Sbjct: 214 SVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,521
Number of Sequences: 5004
Number of extensions: 43393
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)