Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29j19
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0082 - 4060018-4061604 30 1.7
05_05_0159 + 22825086-22826295,22826622-22826635 29 2.3
12_02_0329 + 17585046-17585561 29 4.0
04_01_0041 - 464695-464850,467485-469029 29 4.0
01_05_0227 - 19512866-19514983 29 4.0
11_06_0610 - 25449085-25453284 27 9.3
09_02_0252 - 6315834-6315959,6316074-6317018 27 9.3
07_01_0626 - 4681826-4682707 27 9.3
02_04_0486 - 23351960-23353093 27 9.3
02_04_0483 - 23305492-23306625 27 9.3
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 27 9.3
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 394 PSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKS 573
PS+ +P+ + + TTA + G ++ ++ R I LAL A C ++P +
Sbjct: 117 PSVPVPLGLTMSPTTAHYSFSYGGASSSSATPRAPIAPLALRAPAPHLCVPRVLSPPAPT 176
Query: 574 -PIPYTKPPQT*HPFPSIP 627
P+ T P P P +P
Sbjct: 177 PPVLATHVPTPPAPAPPVP 195
>05_05_0159 + 22825086-22826295,22826622-22826635
Length = 407
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/80 (28%), Positives = 32/80 (40%)
Frame = +1
Query: 385 PSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGYINPI 564
P L +P+ LC T GNV + + GGL L+ DL +
Sbjct: 59 PRVSRLTVPLHCLLCPATPGTE---GNVACRINICTASSGGLLLLRTVF---DLAQVPDH 112
Query: 565 IKSPIPYTKPPQT*HPFPSI 624
+K PIP +K T P P +
Sbjct: 113 VKFPIPISKDDTTWPPLPGL 132
>12_02_0329 + 17585046-17585561
Length = 171
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 558 VDVAEIAGEGGLMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYFEARGG 388
V VA+ +G+G K TA S G GG+ A++ C + C G+ +GG
Sbjct: 91 VIVADASGDGSAAPKSGTAGSTHPGPEGGRSAAAWLCRSHNH----RCHGHGGGKGG 143
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 238 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 414
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 415 TVD 423
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 455 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 363
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 527 PPSPAISATSTRSSNPRFHTPNHPRLNIHFHQSP 628
PP+P A+S P HTP+ P+ +SP
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSP 684
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 527 PPSPAISATSTRSSNPRFHTP 589
P SP +S +S+R+ +PR H P
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRP 66
>07_01_0626 - 4681826-4682707
Length = 293
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 522 SSHPPLRSRLHQPDHQIPDSIHQTTPDLTSISI 620
++ P + S L P+H P +++ +TP T+ +I
Sbjct: 47 TTRPAVESSLAAPEHVFPATMNSSTPSTTAAAI 79
>02_04_0486 - 23351960-23353093
Length = 377
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 430 WTTADVTVEGGNVLATPSSSRITIGGL 510
W D VEG +LA P S+ + GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198
>02_04_0483 - 23305492-23306625
Length = 377
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 430 WTTADVTVEGGNVLATPSSSRITIGGL 510
W D VEG +LA P S+ + GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 539 AISATSTRSSNPRFHTPNHPRLNIHFHQS 625
A S+T+TR S PR H P P ++ +S
Sbjct: 2 AASSTATRLSPPRLHAPTTPSPHLPLRRS 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,237
Number of Sequences: 37544
Number of extensions: 350436
Number of successful extensions: 1294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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