Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j19
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    31   0.68 
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.1  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    28   6.3  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    28   6.3  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   8.4  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 513 PYASSHPPLRSRLHQPDHQIPDSIHQTT 596
           P +S HPPL S  H  +H  PD+   +T
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDTTLSST 93


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 351
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 494 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 387
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 524 KPPSPAISATSTRSSNPRFHTPNHPRLNIHFH 619
           K PSP+ S T     + RF T  HP  +  FH
Sbjct: 246 KLPSPSKSCTDLAGGSQRFKTGPHPMQSSSFH 277


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 508 LALMHQATLPCDLGYINPIIKSPIPYTKPP 597
           L + HQA L C L Y     +  +PY K P
Sbjct: 387 LVISHQAVLRCILAYFTNKNRDDLPYLKVP 416


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 508 LALMHQATLPCDLGYINPIIKSPIPYTKPP 597
           L + HQA L C L Y     +  +PY K P
Sbjct: 393 LVISHQAVLRCILAYFTNKNRDDLPYLKVP 422


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical protein
            T13F2.3b protein.
          Length = 1076

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 523  QATLPCDLGYINPIIKSPIPYTKPPQT*HPFPSI 624
            Q  +P  +    P+ + P PYT PP+   P  S+
Sbjct: 1028 QYRIPIPIVVKTPVFRQPPPYTAPPKDQEPAASL 1061


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical protein
            T13F2.3a protein.
          Length = 1074

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 523  QATLPCDLGYINPIIKSPIPYTKPPQT*HPFPSI 624
            Q  +P  +    P+ + P PYT PP+   P  S+
Sbjct: 1026 QYRIPIPIVVKTPVFRQPPPYTAPPKDQEPAASL 1059


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 397 SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIGGLALM 519
           ++KIP+ + L W+T  D+  TV  G  +  PS+S + +G L  +
Sbjct: 56  NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLGLLGYL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,230
Number of Sequences: 27780
Number of extensions: 260231
Number of successful extensions: 1123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)