Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j16
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443...    27   8.0  
10_02_0164 + 6063132-6063533                                           27   8.0  
04_03_0910 + 20751014-20753437                                         27   8.0  

>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
            4430555-4432052,4432199-4432217,4432469-4432675,
            4432814-4433065
          Length = 1363

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 406  SGCHIVFKYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEI 549
            +G    F+ K+V  A   H     F NA+ ++ +NE   K DVAE+ I
Sbjct: 870  NGSSFEFEVKAV--AGDTHLGGADFDNAMVNHCINEFIRKHDVAEEGI 915


>10_02_0164 + 6063132-6063533
          Length = 133

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 257 LVDDMQ*SEYVCRLICLALILSKIV 183
           L+DD   S+Y+C  +CL ++L+ IV
Sbjct: 100 LIDDGH-SDYLCEAVCLFIVLAPIV 123


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 82  RTMANMSLDNEYKFELAKTGLFSHNNLIKCIG 177
           R ++   ++ +++ E++  G+  H NL+K IG
Sbjct: 535 RLVSYCQVEKQFRAEVSSIGVIHHTNLVKLIG 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,520,925
Number of Sequences: 37544
Number of extensions: 280488
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)